Gene loci information

Transcript annotation

  • This transcript has been annotated as 26S proteasome regulatory subunit 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9569 g9569.t15 TTS g9569.t15 4074061 4074061
chr_1 g9569 g9569.t15 isoform g9569.t15 4074131 4075622
chr_1 g9569 g9569.t15 exon g9569.t15.exon1 4074131 4074766
chr_1 g9569 g9569.t15 cds g9569.t15.CDS1 4074131 4074766
chr_1 g9569 g9569.t15 exon g9569.t15.exon2 4074828 4075251
chr_1 g9569 g9569.t15 cds g9569.t15.CDS2 4074828 4075251
chr_1 g9569 g9569.t15 exon g9569.t15.exon3 4075320 4075479
chr_1 g9569 g9569.t15 cds g9569.t15.CDS3 4075320 4075479
chr_1 g9569 g9569.t15 exon g9569.t15.exon4 4075547 4075622
chr_1 g9569 g9569.t15 cds g9569.t15.CDS4 4075547 4075622
chr_1 g9569 g9569.t15 TSS g9569.t15 4075709 4075709

Sequences

>g9569.t15 Gene=g9569 Length=1296
ATGCCGGATCATTTAGGTGATGATATGCGTAAGGTGAAAGTGGACGATAAGGAAAAAGAT
GAGCCAGTAATAAAAGATCTCGATGAAGGAGATATTGAGCTTTTAAAGACTTATGGACAG
GGACAGTATCATAAAAGTATCAAACAAATTGAAGATGATATCCAAAAGGCAATTAAACAA
GTTAATGAACTCACTGGAATCAAAGAAAGTGACACTGGTCTTGCTCCTCCAGCTTTTGCT
GATAAACAAACACTTCAGAATGAGCAACCATTACAAGTAGCTCGCTGTACAAAAATTATT
AATGCGGATTCGGATGATCCTAAATATATCATCAATGTTAAGCAATTTGCAAAATTTGTA
GTTGATCTTGCTGACTCAGTTGCACCAACAGATATTGAAGAAGGAATGCGTGTGGGTGTT
GATAGAAATAAATATCAAATTCATATTCCATTGCCTCCGAAAATTGATCCAACTGTTACA
ATGATGCAAGTTGAAGATAAACCAGATGTCACTTACTCAGATGTTGGAGGATGTAAAGAA
CAGATTGAGAAACTTAGAGAAGTTGTTGAAACACCTCTCTTGCATCCAGAAAAGTTTGTC
ACACTCGGTATTGAACCACCAAAAGGCGTGCTTCTTTTTGGACCACCTGGAACTGGCAAG
ACACTATGTGCAAGAGCAGTTGCAAATCGTACTGATGCTTGTTTTATTCGTGTAATTGGA
TCTGAGTTGGTTCAGAAATATGTCGGTGAAGGAGCGAGAATGGTTCGCGAATTATTTGAA
ATGGCACGCAGTAAAAAAGCTTGTCTCATCTTTTTCGATGAAATTGATGCTATTGGTGGT
GCACGTTTTGACGATGGTGCAGGAGGAGATAATGAAGTTCAAAGAACTATGTTGGAACTT
ATTAATCAACTTGATGGTTTTGATCCTCGTGGTAATATCAAAGTTTTGATGGCTACAAAT
CGTCCTGATACTTTAGATCCTGCATTAATGCGTCCTGGTCGTCTCGATAGAAAAGTTGAA
TTTGGCTTACCTGACCTCGAAGGAAGAGCTCACATTTTTAAAATTCATGCTCGTTCAATG
TCTGTTGAGCGTGATATTCGCTTTGAATTGCTTGCTCGATTATGTCCTAATTCAACTGGT
GCTGAAATTCGATCAGTTTGCACAGAAGCTGGCATGTTTGCTATTCGTGCACGACGTAAA
GTTGCAACAGAGAAAGATTTCCTTGAAGCTGTGAACAAAGTCATCAAGAGCTACGCCAAA
TTCTCAGCTACTCCACGTTACATGACTTACAATTAA

>g9569.t15 Gene=g9569 Length=431
MPDHLGDDMRKVKVDDKEKDEPVIKDLDEGDIELLKTYGQGQYHKSIKQIEDDIQKAIKQ
VNELTGIKESDTGLAPPAFADKQTLQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFV
VDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKE
QIEKLREVVETPLLHPEKFVTLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIG
SELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLEL
INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRAHIFKIHARSM
SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVIKSYAK
FSATPRYMTYN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g9569.t15 CDD cd00009 AAA 176 343 1.07962E-26
9 g9569.t15 Coils Coil Coil 47 67 -
8 g9569.t15 Gene3D G3DSA:2.40.50.140 - 40 162 3.1E-25
6 g9569.t15 Gene3D G3DSA:3.40.50.300 - 163 342 1.7E-65
7 g9569.t15 Gene3D G3DSA:1.10.8.60 - 344 416 8.8E-23
3 g9569.t15 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 18 429 7.7E-246
4 g9569.t15 PANTHER PTHR23073:SF13 26S PROTEASOME REGULATORY SUBUNIT 7 18 429 7.7E-246
1 g9569.t15 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 342 1.2E-39
2 g9569.t15 Pfam PF17862 AAA+ lid domain 365 409 1.1E-8
11 g9569.t15 ProSitePatterns PS00674 AAA-protein family signature. 313 331 -
12 g9569.t15 SMART SM00382 AAA_5 206 345 9.5E-23
5 g9569.t15 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 168 418 4.43E-68
13 g9569.t15 TIGRFAM TIGR01242 26Sp45: 26S proteasome subunit P45 family 103 414 7.9E-123

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0036402 proteasome-activating activity MF
GO:0030163 protein catabolic process BP
GO:0005737 cytoplasm CC
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed