General information for g9569.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome regulatory subunit 7.
Parent gene
- The parent gene g9569 is located on chr_1: 4075062..4075622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9569 | g9569.t16 | TTS | g9569.t16 | 4074061 | 4074061 |
| chr_1 | g9569 | g9569.t16 | isoform | g9569.t16 | 4074131 | 4075622 |
| chr_1 | g9569 | g9569.t16 | exon | g9569.t16.exon1 | 4074131 | 4074766 |
| chr_1 | g9569 | g9569.t16 | cds | g9569.t16.CDS1 | 4074131 | 4074766 |
| chr_1 | g9569 | g9569.t16 | exon | g9569.t16.exon2 | 4074828 | 4075251 |
| chr_1 | g9569 | g9569.t16 | cds | g9569.t16.CDS2 | 4074828 | 4075082 |
| chr_1 | g9569 | g9569.t16 | exon | g9569.t16.exon3 | 4075308 | 4075479 |
| chr_1 | g9569 | g9569.t16 | exon | g9569.t16.exon4 | 4075557 | 4075622 |
| chr_1 | g9569 | g9569.t16 | TSS | g9569.t16 | 4075709 | 4075709 |
Sequences
>g9569.t16 Gene=g9569 Length=1298
ATGCCGGATCATTTAGGTGATGATATGCGTAAGGTGAAAGTGGACGATAAGGAAAAAGAT
GAGCCAATCTCGATGAAGGAGATATTGAGCTTTTAAAGACTTATGGACAGGGACAGTATC
ATAAAAGTATCAAACAAATTGAAGATGATATCCAAAAGGCAATTAAACAAGTTAATGAAC
TCACTGGAATCAAAGAAAGTGACACTGGTCTTGCTCCTCCAGCTTTGTGGGATTTAGCTG
CTGATAAACAAACACTTCAGAATGAGCAACCATTACAAGTAGCTCGCTGTACAAAAATTA
TTAATGCGGATTCGGATGATCCTAAATATATCATCAATGTTAAGCAATTTGCAAAATTTG
TAGTTGATCTTGCTGACTCAGTTGCACCAACAGATATTGAAGAAGGAATGCGTGTGGGTG
TTGATAGAAATAAATATCAAATTCATATTCCATTGCCTCCGAAAATTGATCCAACTGTTA
CAATGATGCAAGTTGAAGATAAACCAGATGTCACTTACTCAGATGTTGGAGGATGTAAAG
AACAGATTGAGAAACTTAGAGAAGTTGTTGAAACACCTCTCTTGCATCCAGAAAAGTTTG
TCACACTCGGTATTGAACCACCAAAAGGCGTGCTTCTTTTTGGACCACCTGGAACTGGCA
AGACACTATGTGCAAGAGCAGTTGCAAATCGTACTGATGCTTGTTTTATTCGTGTAATTG
GATCTGAGTTGGTTCAGAAATATGTCGGTGAAGGAGCGAGAATGGTTCGCGAATTATTTG
AAATGGCACGCAGTAAAAAAGCTTGTCTCATCTTTTTCGATGAAATTGATGCTATTGGTG
GTGCACGTTTTGACGATGGTGCAGGAGGAGATAATGAAGTTCAAAGAACTATGTTGGAAC
TTATTAATCAACTTGATGGTTTTGATCCTCGTGGTAATATCAAAGTTTTGATGGCTACAA
ATCGTCCTGATACTTTAGATCCTGCATTAATGCGTCCTGGTCGTCTCGATAGAAAAGTTG
AATTTGGCTTACCTGACCTCGAAGGAAGAGCTCACATTTTTAAAATTCATGCTCGTTCAA
TGTCTGTTGAGCGTGATATTCGCTTTGAATTGCTTGCTCGATTATGTCCTAATTCAACTG
GTGCTGAAATTCGATCAGTTTGCACAGAAGCTGGCATGTTTGCTATTCGTGCACGACGTA
AAGTTGCAACAGAGAAAGATTTCCTTGAAGCTGTGAACAAAGTCATCAAGAGCTACGCCA
AATTCTCAGCTACTCCACGTTACATGACTTACAATTAA
>g9569.t16 Gene=g9569 Length=296
MRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLH
PEKFVTLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMV
RELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV
LMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRAHIFKIHARSMSVERDIRFELLARLC
PNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVIKSYAKFSATPRYMTYN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g9569.t16 | CDD | cd00009 | AAA | 41 | 208 | 2.09561E-27 |
| 8 | g9569.t16 | Gene3D | G3DSA:2.40.50.140 | - | 1 | 27 | 1.7E-8 |
| 6 | g9569.t16 | Gene3D | G3DSA:3.40.50.300 | - | 28 | 207 | 6.6E-66 |
| 7 | g9569.t16 | Gene3D | G3DSA:1.10.8.60 | - | 209 | 281 | 4.7E-23 |
| 3 | g9569.t16 | PANTHER | PTHR23073 | 26S PROTEASOME REGULATORY SUBUNIT | 1 | 294 | 2.9E-193 |
| 4 | g9569.t16 | PANTHER | PTHR23073:SF13 | 26S PROTEASOME REGULATORY SUBUNIT 7 | 1 | 294 | 2.9E-193 |
| 1 | g9569.t16 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 75 | 207 | 5.1E-40 |
| 2 | g9569.t16 | Pfam | PF17862 | AAA+ lid domain | 230 | 274 | 6.6E-9 |
| 10 | g9569.t16 | ProSitePatterns | PS00674 | AAA-protein family signature. | 178 | 196 | - |
| 11 | g9569.t16 | SMART | SM00382 | AAA_5 | 71 | 210 | 9.5E-23 |
| 5 | g9569.t16 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 33 | 283 | 1.32E-68 |
| 12 | g9569.t16 | TIGRFAM | TIGR01242 | 26Sp45: 26S proteasome subunit P45 family | 2 | 279 | 1.1E-117 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0036402 | proteasome-activating activity | MF |
| GO:0030163 | protein catabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
