General information for g9573.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g9573 is located on chr_1: 4103749..4105292 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9573 | g9573.t2 | isoform | g9573.t2 | 4103749 | 4105292 |
| chr_1 | g9573 | g9573.t2 | exon | g9573.t2.exon1 | 4103749 | 4105052 |
| chr_1 | g9573 | g9573.t2 | cds | g9573.t2.CDS1 | 4103751 | 4105052 |
| chr_1 | g9573 | g9573.t2 | TTS | g9573.t2 | 4103754 | 4103754 |
| chr_1 | g9573 | g9573.t2 | exon | g9573.t2.exon2 | 4105130 | 4105292 |
| chr_1 | g9573 | g9573.t2 | TSS | g9573.t2 | 4105289 | 4105289 |
Sequences
>g9573.t2 Gene=g9573 Length=1467
TATATGGGTATAGTCTGCAAAGAAGTGTTAAGGTGTTGATGAAATTTTTTCATTCTTTCG
CTTATAAAACCGAGTTTAAGTGACAAAAATCAATTACTAGCATGTGTGGTGGTTCATTGA
GAAGCATAATATTGTGTTGATGATGAAATAGGTGTAAAATTGTATGAGCTCTAAATTTAA
TGAGCAAACAAATCCAGAATTGGTAAAGAAATTGGATTTTCATGACGATAAGACATTGAA
GTGGAAAACATTAATTAACAATACATATGCAAAAAAAGATCGCGAGAAACGAAATAAAAA
TAGAAATAAAGATGGTGAAGATTCGACGGACGATAAAAGTCAACAGCAAGAACCATCAAC
ATCTACTTCATTATTAAATAGAAGAGATACAATGTCCGCTGATAATTCAGATAGTGAAAG
AAATAACAGTGAAGAAGAAGAGAGCATGGATAATGCCGATGAATTAAAAGCTAGCGCTTC
AATAAGTGAGAAGTTTGGTAATAATGTTAAAGAGAAAAAACTCGTAATTGACGATGATTT
ACATACACTCGAACAAAAAAAAAGTGCTGCTGCACAACAAGCAAGCAGCACACACACAAC
TATATCGTCTACATGCGACGACGACAACGACGATGAAAAAAATAAAATTATTTCAACTAA
TTTACCTCAATTGAATACAAACAGTCAAGCAATTGAAAGCAACACCAAAATAACACAGAC
CACTGTAACAACATCAACATTAACTGCTGATAAGAAGCATGATGATAATACGACTATAAT
GAACAGTAAAAATACAGAGAATATAAATAGTATTGGTGTTGCTCTTAGTGACGATGATAA
GAAAGCTGGCTCCATAGCCAAAACATCAAAAATTAATTCAAATTCTTCTACAATTACTGT
AATTTCTTCTACGTCCTTTTCTTCTTCAACAACATTAATTTCTGCAAATAATAATAATAG
CAGTAATAATAAAGTTATTGATAAAACAATCGTTGCAAGTTCGTCACGAAATTTAAGAAG
TAATAAAAACTCCTCAACTCAAAATTCGACAACACCAACACATAGGCAAATTTCGAATAG
CAGTAGTATGTCGGATGATAAAATTAAAAGTGATGAAATGGCAATCAAAAGTGATTTAGA
AGAGAATGATGATTCTCAAAATAGTTCCATTGCTGTTCATCGTAAAGGACGTGGAAGACC
AAGATTAGATGTTGCTAAGAATAATAATAATAACAATACTTCTACGGCAATTATCACGAA
AAATTCAGTAGATAGTGTTGTCGTTTGTGGTAGTGGTGATGGAAATAATGGAAATGAAAA
TGAATCGGATGTAAACCAAAAACGTGGTCGTGGTAGAATGCCGAAAACGCGATCGATAAT
TGAATCGTCGTCATCATCTTCGGTAGTGAATGAAGAGAAAAAATTAAATGAGGCAGTAAT
GACAGAAGAGACGATTGAAGTGAAAAA
>g9573.t2 Gene=g9573 Length=434
MSSKFNEQTNPELVKKLDFHDDKTLKWKTLINNTYAKKDREKRNKNRNKDGEDSTDDKSQ
QQEPSTSTSLLNRRDTMSADNSDSERNNSEEEESMDNADELKASASISEKFGNNVKEKKL
VIDDDLHTLEQKKSAAAQQASSTHTTISSTCDDDNDDEKNKIISTNLPQLNTNSQAIESN
TKITQTTVTTSTLTADKKHDDNTTIMNSKNTENINSIGVALSDDDKKAGSIAKTSKINSN
SSTITVISSTSFSSSTTLISANNNNSSNNKVIDKTIVASSSRNLRSNKNSSTQNSTTPTH
RQISNSSSMSDDKIKSDEMAIKSDLEENDDSQNSSIAVHRKGRGRPRLDVAKNNNNNNTS
TAIITKNSVDSVVVCGSGDGNNGNENESDVNQKRGRGRMPKTRSIIESSSSSSVVNEEKK
LNEAVMTEETIEVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9573.t2 | Coils | Coil | Coil | 81 | 101 | - |
| 8 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 102 | - |
| 10 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 59 | - |
| 9 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - |
| 5 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 149 | - |
| 7 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 155 | - |
| 1 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 361 | - |
| 2 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 310 | - |
| 4 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 348 | - |
| 6 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 421 | - |
| 3 | g9573.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 418 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
