General information for g958.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g958 is located on chr_3: 7041650..7062065 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g958 | g958.t2 | TTS | g958.t2 | 7039191 | 7039191 |
| chr_3 | g958 | g958.t2 | isoform | g958.t2 | 7039451 | 7041650 |
| chr_3 | g958 | g958.t2 | exon | g958.t2.exon1 | 7039451 | 7041502 |
| chr_3 | g958 | g958.t2 | cds | g958.t2.CDS1 | 7039451 | 7041502 |
| chr_3 | g958 | g958.t2 | exon | g958.t2.exon2 | 7041630 | 7041650 |
| chr_3 | g958 | g958.t2 | cds | g958.t2.CDS2 | 7041630 | 7041650 |
| chr_3 | g958 | g958.t2 | TSS | g958.t2 | 7041641 | 7041641 |
Sequences
>g958.t2 Gene=g958 Length=2073
ATGATTGAATTTGAATTAAATTGTCGAATTTTTTTGAATTTCATATTGAATTTTAGGAAT
ACCAACAAATATTGTTTTAAAAATCTTAGTCGCGTAGATTGGGATATTTTTCAATTATCT
GATCATCATGGAATCGCTCTTAGAACTCGAGCAATATCTGGATATAGCGAAAAAGATTTA
TTTATAGAAAGTTTACCACCGATACCAATAAGAACAGTAAAACATTTGAGTGAACCTGAA
AATTTTATTCAACGTGAAAAATTAGAAACTGATAAGTATATACAAACTAGATTAGAATCA
AGAATTAAAGTCGCATTCAGAGCTAAGAAAGTATTCAATGAGGCTCAGAACATCAATGGA
GATATTTTGGAATATATTGGAAATAAAATGCTTAAAAAAACATCGTATTACAACACTACA
GATACATTCGATCTAAATTGCAATAAAGGAACGCTAAATTATATTGAAGGAGACGAGTAT
GAATCTCTTGCATATGTCTGGGATTCATCATCAATTGATTTTTTTCGACTGCAAAATAAT
GATTTAATTAAAATATACTCAACTCAAACAGTTCCTGGACGCATGCCAAATGAGCTGATA
ACAGATTCCAAATCAAAATTTGCTCTCGTACGTTATCCGCTTCATATTCATCTTTTTGAA
GCTCCTAATTATGATAAACTTCCAAAAAAATTATCTATAAAACCTATCGACTCTATAAGA
TACAAAACAGAAATTGTTGCTTCTTCACTTCAAGATAAATATTTAACAACAGTTAATACA
AAGCATCGATTAAGTAGATTCGATCTAGAACATAAATTTAAACATTTCTCAATCAAACTC
AATAACTATTTTGTTGGTCCTATTTCGCCTATTTCTGTTTCCGATCATATTAAAGCAAAC
AATAGGGATAATTTTATCACGGTGACTACGAGACAGAGCTATAGCCTCTTTGATTGTCGA
GTAAAGAAAAAATACTGCATGACCAAACTTTTCACTCATAAAGATACTATGCTATTTGCT
TGCGAAAGAATCATGAATCATACTCAATCACTTTTGGATAAAAATATAGTTTATATCTCA
TCATCACACTTATTATACGCATTCGATCATCGTAATTTGAAAGAACCAGTTGTACATTGG
ACACATGGACTCATAAAACCAGCTCTCATGCTAAAAACTCAATTATATGGCACAAAAGAA
GTTATTTGTGTATCAAGTCATAAACCGGATGATTTTGCGTTATTCAATTATAGCGCAGAG
TATATTAATTACAATCCTTTCAAACCAATAGGTCTTGAAAATGTTTACAACAAATTTAGG
GAAGAAGGTCAATTTTTGTTATCTGATACAATTCCTGAACGAATTAAAGCAAATAATACT
GGTATTGCTCTTCAATGTGATCCAATAAGTCGAGTTGTTAATGTTTTTACACAAAATTTT
TATGGTGATATATTCAAATATGAAGTGAAATGTCAACAAAAAAGTAGTAGAAATCATGAG
GTAAATTATCAAGCATTGTCCGAGAGATATCAAAATTTAGACAACTTTCTTAGCGAAAAA
CGTAATCCTAACAAGTATATGAGTGATGATGACCGAATAAATCATGGAAGAATGTGTATT
GATGATATAATCAGACTTGATGGAATTTCAAAAATTTTAACTGGTGAAAAAATACCAATA
ATAGAAGCAGATATCGACATGCTTGAGCCTGAGAAAGTTTCAAACCCTAAACCATCATGG
AAAATTAATATTCACGATGCGAGACAATATCAAGATTTACTAGCTACTGAAATAATGCAA
GTTTGGGATGATATTGAAATGGAAGAAATGAGACCAGATGTTTTTGCTGCAGCAATTGAT
GCATCACAAAATGACCAAGGCAAAGAAATGGACAAAGTTTCAATGTGGCTTAAAAATAAT
ATATCAACACATAATTCAATAGTAAATGATTCGATAGATTTATTAGATAGCACTGTTCTT
ACTCAAGATTTGCCAACGCAAGCAACAGGTGCTTCAACTTCAACACCTGCTCTTCGTTCT
GCAAGAAAGAAACCTAGACTTGCTGGATTCTAA
>g958.t2 Gene=g958 Length=690
MIEFELNCRIFLNFILNFRNTNKYCFKNLSRVDWDIFQLSDHHGIALRTRAISGYSEKDL
FIESLPPIPIRTVKHLSEPENFIQREKLETDKYIQTRLESRIKVAFRAKKVFNEAQNING
DILEYIGNKMLKKTSYYNTTDTFDLNCNKGTLNYIEGDEYESLAYVWDSSSIDFFRLQNN
DLIKIYSTQTVPGRMPNELITDSKSKFALVRYPLHIHLFEAPNYDKLPKKLSIKPIDSIR
YKTEIVASSLQDKYLTTVNTKHRLSRFDLEHKFKHFSIKLNNYFVGPISPISVSDHIKAN
NRDNFITVTTRQSYSLFDCRVKKKYCMTKLFTHKDTMLFACERIMNHTQSLLDKNIVYIS
SSHLLYAFDHRNLKEPVVHWTHGLIKPALMLKTQLYGTKEVICVSSHKPDDFALFNYSAE
YINYNPFKPIGLENVYNKFREEGQFLLSDTIPERIKANNTGIALQCDPISRVVNVFTQNF
YGDIFKYEVKCQQKSSRNHEVNYQALSERYQNLDNFLSEKRNPNKYMSDDDRINHGRMCI
DDIIRLDGISKILTGEKIPIIEADIDMLEPEKVSNPKPSWKINIHDARQYQDLLATEIMQ
VWDDIEMEEMRPDVFAAAIDASQNDQGKEMDKVSMWLKNNISTHNSIVNDSIDLLDSTVL
TQDLPTQATGASTSTPALRSARKKPRLAGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g958.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 690 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
