General information for g9583.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Proteasome subunit alpha type-1.
Parent gene
- The parent gene g9583 is located on chr_1: 4141746..4142444 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9583 | g9583.t1 | isoform | g9583.t1 | 4141746 | 4142444 |
| chr_1 | g9583 | g9583.t1 | exon | g9583.t1.exon1 | 4141746 | 4142065 |
| chr_1 | g9583 | g9583.t1 | cds | g9583.t1.CDS1 | 4141746 | 4142065 |
| chr_1 | g9583 | g9583.t1 | exon | g9583.t1.exon2 | 4142124 | 4142353 |
| chr_1 | g9583 | g9583.t1 | cds | g9583.t1.CDS2 | 4142124 | 4142353 |
| chr_1 | g9583 | g9583.t1 | exon | g9583.t1.exon3 | 4142410 | 4142444 |
| chr_1 | g9583 | g9583.t1 | cds | g9583.t1.CDS3 | 4142410 | 4142444 |
| chr_1 | g9583 | g9583.t1 | TSS | g9583.t1 | NA | NA |
| chr_1 | g9583 | g9583.t1 | TTS | g9583.t1 | NA | NA |
Sequences
>g9583.t1 Gene=g9583 Length=585
ATGACTGGAATTACTACTGATACTCGTGTTCTATGTCACTATATGCGTCAGGAATGCATA
AATCATAAGCATTCTTATGATAGAAATCATCCAGTTGGTCGCTTGATTAATTTATTAAAA
CTTAAGATGCAGGTGTGCACTCAGCGTTATGACCGTCGTCCTTATGGTGTTGGTTTGCTT
GTTGCTGGTTACGATGATCAAGGACCACATATTTATCAGACTTGTCCAAGTGCAAACTTT
TACGATTGCAAAGCAATGGCAATTGATTGCAATCTTTCTGATTTGATTAATCATGGTGTT
CGTGCTTTGACGGGTACATTACCAAACGAAACTAAATTGAACAATAAAAACTTGTCAATT
TGTGTTGTTGGAAAGAATTATAAATTCCATTGCTTAGACGAAAACGAGTTGGAGAAATAT
ATTATTGCTGAAATCGTTGGAACTCAACCTACTTCTTCTGCTAGTGATTCTTCAGAGGTA
GGCGTTGGAAGAACCGAAAGACATGGCGAAGAACAATCGTCAACTTTAAACCCACAAGAT
CCAACTCCAGTAGAATCTGCTACTGAAGATCGAAGAATGCAATAA
>g9583.t1 Gene=g9583 Length=194
MTGITTDTRVLCHYMRQECINHKHSYDRNHPVGRLINLLKLKMQVCTQRYDRRPYGVGLL
VAGYDDQGPHIYQTCPSANFYDCKAMAIDCNLSDLINHGVRALTGTLPNETKLNNKNLSI
CVVGKNYKFHCLDENELEKYIIAEIVGTQPTSSASDSSEVGVGRTERHGEEQSSTLNPQD
PTPVESATEDRRMQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9583.t1 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 145 | 3.0E-36 |
| 5 | g9583.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 194 | - |
| 2 | g9583.t1 | PANTHER | PTHR11599:SF12 | PROTEASOME SUBUNIT ALPHA TYPE-1 | 2 | 168 | 9.8E-42 |
| 3 | g9583.t1 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 2 | 168 | 9.8E-42 |
| 1 | g9583.t1 | Pfam | PF00227 | Proteasome subunit | 1 | 88 | 6.3E-25 |
| 4 | g9583.t1 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 141 | 1.61E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019773 | proteasome core complex, alpha-subunit complex | CC |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
