General information for g9604.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9604 is located on chr_1: 4257169..4260743 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9604 | g9604.t2 | isoform | g9604.t2 | 4257011 | 4257918 |
| chr_1 | g9604 | g9604.t2 | exon | g9604.t2.exon1 | 4257011 | 4257132 |
| chr_1 | g9604 | g9604.t2 | exon | g9604.t2.exon2 | 4257205 | 4257918 |
| chr_1 | g9604 | g9604.t2 | cds | g9604.t2.CDS1 | 4257616 | 4257918 |
| chr_1 | g9604 | g9604.t2 | TSS | g9604.t2 | NA | NA |
| chr_1 | g9604 | g9604.t2 | TTS | g9604.t2 | NA | NA |
Sequences
>g9604.t2 Gene=g9604 Length=836
ACTGTGGTGGTGATATCGATCCCGATAGCGGCAGAGGACTTGAAAAATTCAGAACTTCAC
AAAAATATGTAAAATTTGCAAAACAAAAATTTGATAAATTTTCTTTGGCATGTTTACAGA
AGATTGATTTACTTTCAGCAGCTAGATGTAATCTTTTCAGTTATTCTTTGGCAACTTATC
AAAATAACTGGATAACGTTATTGCAAAAGAATCAAGAAGTATTGGAAGCACATCTAAGAA
TAATTGAAAATGAGCCCAAAGTTAAGCATAATTTTGGAATTCTCAAAGATTTGGCTCAAG
AAATTGATGAACCTTCATCATCGAATGTTGATGCTGCTCAAGCTGAACCAGCCAAAGAAC
TTAATGATAATGATCAGCGTTTATTCTTTGGAGAGGAATTCAGCGATAGAAGACCAACTG
AAAAAAGTGACAATGATAAAATCAATGAGGAATCACATTTGACGAAGAGTAATAATAATA
TTAGTAAGAATGAAGATGAAAAATTAATTGATTATGACACATTCGATGAATTTATGATTT
CAACAAATATTCCTTTGCCTTCTCAACTTCTAATGGATGATTCAATTTTCAATACTGGTG
AAATAATGCAATCAAATGTTGATTTACTAGGCTCATTAGCTGTATCACAAACACATATGC
CAAGTGAGTTATTATCAGCTACAAGCAAGGAAACCAATAATAGTATTTCACTCAATAAAA
ATCCGTCTAAAAAAGCAAGTGATGTTAGTAAATGGTTTTCGCTATTTTCGGACCTCGATC
CACTTAATCAGCAAAAAGAAGTTAATGATGCAAATGAAAATATGCATGCCGCTTAA
>g9604.t2 Gene=g9604 Length=100
MISTNIPLPSQLLMDDSIFNTGEIMQSNVDLLGSLAVSQTHMPSELLSATSKETNNSISL
NKNPSKKASDVSKWFSLFSDLDPLNQQKEVNDANENMHAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9604.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 69 | - |
| 1 | g9604.t2 | Pfam | PF04629 | Islet cell autoantigen ICA69, C-terminal domain | 8 | 85 | 1.3E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
