General information for g9613.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9613 is located on chr_1: 4283973..4285738 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9613 | g9613.t6 | TTS | g9613.t6 | 4283237 | 4283237 |
| chr_1 | g9613 | g9613.t6 | isoform | g9613.t6 | 4283973 | 4285738 |
| chr_1 | g9613 | g9613.t6 | exon | g9613.t6.exon1 | 4283973 | 4285081 |
| chr_1 | g9613 | g9613.t6 | cds | g9613.t6.CDS1 | 4283973 | 4285007 |
| chr_1 | g9613 | g9613.t6 | exon | g9613.t6.exon2 | 4285143 | 4285275 |
| chr_1 | g9613 | g9613.t6 | exon | g9613.t6.exon3 | 4285695 | 4285738 |
| chr_1 | g9613 | g9613.t6 | TSS | g9613.t6 | 4285836 | 4285836 |
Sequences
>g9613.t6 Gene=g9613 Length=1286
ATGAATAAGAAAGATGATAAGAAAGCAAAGTTGATACAAGAAAAATTCTCAATCAGTTGC
TAAGAGATGAGGATAACAAGTATTGTTGTGATTGCGATCAGAAAGGACCTAGATGGGCAA
GTTGGAATTTAGGCATTTTCTTATGCATTCGTTGCGCTGGAATTCATCGTAATTTAGGCG
TTCATATTTCTCGGGTTAAATCAGTCAATCTGGATACTTGGTCACCAGAGCAAGTTGTTT
GTCTACAACAAATGGGAAACTCGCGAGCTCGGGCAGTTTATGAAGCCTTATTATCTGATA
ATTTTCGTCGTCCACAAACGGATTCAGGATTAGAGAGTTTTATCCGTGCAAAATATGAGC
AAAAGAAGTATATAGCACGAGAATGGATTCCGCCACCATTTCCACCAAAAGTCAATTGGG
ATAAAGAAATTGAAGAAGAACTTGAAAATCAAAAACGAAAAAAGAAAGCATCCAACAATG
TTTCATCTAATGTCACTGAAAGCACACCAACTACTGTAAAGCCTCCAAGTGCACCATCAA
AGAGCATTATACCCGCACCTCTACCAAAACCTCATTCTCCCAAAAACTCAAGAGTTGAGG
CAAGAAAGAGTGCAACTTCAAATTCAACGAATATTACAGACCTATTAGGGTTAGACACTG
AAACACCATCATCAGTGAATAATACATCTTTGAATTCAATTCCAAATTCAGATCATTCAA
CAATTCAAACAAGCACTCAAAATGAAAATTCTCTTAATTTTCCTTTTACGATTACAACAA
ATCAAACGTCATCATCACCAGCAAATCAATTAAGTGGAACATCCAATGGAGAAGCAAATA
ATAGCGCGAATCAATTGAAACAAGAAGAAGTTGACTTTTTCAATCAAACAACATTAGAGA
ATACTAGTAGTGGTGCTAAATTGACAAATGACAAAATTTTGGCGCTCTATGGAAATGCAA
GCTCTTCTTCGCCTCAACTTCCTCAATTTAATATAAATTTCCAACAACATACACAGCAAC
AACCATTATCACTTCAGGATTCATTTTTTTATGGCAATCAACAGCCAGCTGTATTCAAGC
CTCAAATTCCGTCTCAACAACAACATCAATTCTATCCGACTCAACCGATACAAAGTCAGC
CATCATCTTTACTGTATAATGGTAATAATAACAACTTTGCAAATTTTGGTAATTTCGGAG
GAACAATGCAATCGCAGCAAATCAACAAGCTAAATGAGGAAAACATAAGGAAAATTGAAA
GTCTCAATTTTAATAATTTCAAGTAA
>g9613.t6 Gene=g9613 Length=344
MGNSRARAVYEALLSDNFRRPQTDSGLESFIRAKYEQKKYIAREWIPPPFPPKVNWDKEI
EEELENQKRKKKASNNVSSNVTESTPTTVKPPSAPSKSIIPAPLPKPHSPKNSRVEARKS
ATSNSTNITDLLGLDTETPSSVNNTSLNSIPNSDHSTIQTSTQNENSLNFPFTITTNQTS
SSPANQLSGTSNGEANNSANQLKQEEVDFFNQTTLENTSSGAKLTNDKILALYGNASSSS
PQLPQFNINFQQHTQQQPLSLQDSFFYGNQQPAVFKPQIPSQQQHQFYPTQPIQSQPSSL
LYNGNNNNFANFGNFGGTMQSQQINKLNEENIRKIESLNFNNFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9613.t6 | Coils | Coil | Coil | 57 | 77 | - |
| 6 | g9613.t6 | Gene3D | G3DSA:3.30.40.160 | - | 1 | 45 | 2.1E-8 |
| 5 | g9613.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 136 | - |
| 4 | g9613.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 72 | - |
| 2 | g9613.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 94 | - |
| 3 | g9613.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 136 | - |
| 1 | g9613.t6 | PANTHER | PTHR45705 | FI20236P1 | 1 | 325 | 1.7E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
