General information for g9618.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9618 is located on chr_1: 4304737..4306654 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9618 | g9618.t12 | isoform | g9618.t12 | 4304737 | 4306654 |
| chr_1 | g9618 | g9618.t12 | exon | g9618.t12.exon1 | 4304737 | 4305299 |
| chr_1 | g9618 | g9618.t12 | cds | g9618.t12.CDS1 | 4304737 | 4305153 |
| chr_1 | g9618 | g9618.t12 | TSS | g9618.t12 | 4304753 | 4304753 |
| chr_1 | g9618 | g9618.t12 | exon | g9618.t12.exon2 | 4305359 | 4306500 |
| chr_1 | g9618 | g9618.t12 | exon | g9618.t12.exon3 | 4306569 | 4306654 |
| chr_1 | g9618 | g9618.t12 | TTS | g9618.t12 | 4307601 | 4307601 |
Sequences
>g9618.t12 Gene=g9618 Length=1791
ATGAAGCTCTTTCGTGTACTTTACTTTCTATCATCGTTCAAGAAAGGAGATTTTATAAAA
GAAGTAAGAATAATTAATCAGCTTGACCTCGACGCTTTTTCAAAATTGACCGGTGATCAT
AATCAAATTCATAAAAATCTCAAAGGCAATCGACCGATGATTCATGGAGCATTTCTTAAT
AGTATAGTGGCAGCAATAATTGGAACAAAACTTCCAGGAAATGGTTCAATAGTCGTATCT
CAAAATTTTAAATTTCCCTCTAAATGCTTTGCAAATGATCCTATAGAATTTTATGTTGAA
TTGCTTGATGTAAGAAAAATTATTCAAGTGCACTATAAATGCACTCAAAATAATAATGTA
GTTTTTAAGGGCGATGCTAAATTAATTATGAATAAAAAAATGAATAATGTAGAATAATAG
AATTTTATTGATTTATTAATTTAAACTTATTGCCATTATTTAATATATACATGTAATTTA
TTTATATACCAAAGTAAGAACACATTAAAAATGTGAGGAAAAGAATAACAATTATTAAAA
ATATTGCAGCCCATGCTGGCAACATACTCACGTCTATATTGCAAACTATGAATGCAGATA
CGATTGTCAACAGAGTATGATATAACAGAAGCTTCAGCGTCACTTGAAATTGGCGGTGCA
TCTTTATTTAGAACTGGAATAAATTCAAGACCAGTGACAAACATTGAATGAGCATTCGGC
ACATAAAGCACTTGTTGTAAACTAAATGCAATATAAATCATAACTGAACCAGTAAACATT
GTTCCAATTGATACAAAACGACCATCATCACGAACGGCTAATGCTGAAAGGCTTTCATCT
ATGCTAACTATATTATTGAGTCGACCAGTCTCAATATTCCATTGTTGCAAAAATCCTCTT
TGTTTTCCAGCTTTATGTAGTGGATTTGATATTGTAAAGAGTCTATATTTGTCTGTTTCT
CCTTCAATTGTTGAATATCGACATCTTTTATATAAATATTTAACATTCTCTGGTGGTGTC
CATTTCAATTTCAAAGCCTCTTTTCCATTGTTCACTGACCAAACTGATGCAATACCATCT
TTTGCAATTGATATTAAGTATTTGCCATCTGGACTAAAATCCAAGTCATCCAACTCTTTC
TCATGAGCTTTTATATCATGAAATGGTGTCATTCGTGGAAAATGCCATATACGAACGTGG
CCATCAATTCCTGCTGTTGCCATGAATTTTCCATTTAAACAAATTCTCACGACTCTTTGA
TAAGGTTCAGTAGAAAAATCTGTTTGTACTGAATCGGCAGCTTTAATATCGAAGTAAATT
CGTTTCATTTGATTTCCTGAGGAGTCAGTTGTTGTCGATATTTGAGATTTAGGAGTATCT
TGACTCGTAGATTCTGTTCTTCTTCTTTGTCTAACTTCCGTTGATGATGATTCCCTTCGA
CTCGAAATTTGAGTTTCTTTTGTAGGCAATTGACCTACTTTTGAACTGATAACAAACATT
TGACTATGGCCTTCTTGACCAGCAACGAGCAGTGCTCTTCGATCGATGTGTTTTAATGAC
ATATTCATTACGGCTCTTGACCCTGTTTCGTGTCTTTGTATTTCTTCTGCCACAAAATAC
TTTCCATTGTGATACAATTCATATATTTCAAAACCATTTGCTACTCCAGTTTTCGCTGAG
CCACCGCCACCAGCGACAAGCAAATCTGCTTGTTAGCATTTCAGCAGCATAAAGTGGAAA
ATTTACTTTGGCTAAAAGGCAATCGGTTATCATGTTCTTTTTCGACCCCAT
>g9618.t12 Gene=g9618 Length=138
MKLFRVLYFLSSFKKGDFIKEVRIINQLDLDAFSKLTGDHNQIHKNLKGNRPMIHGAFLN
SIVAAIIGTKLPGNGSIVVSQNFKFPSKCFANDPIEFYVELLDVRKIIQVHYKCTQNNNV
VFKGDAKLIMNKKMNNVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9618.t12 | Coils | Coil | Coil | 127 | 138 | - |
| 5 | g9618.t12 | Gene3D | G3DSA:3.10.129.10 | Hotdog Thioesterase | 7 | 135 | 1.7E-20 |
| 2 | g9618.t12 | PANTHER | PTHR43437 | HYDROXYACYL-THIOESTER DEHYDRATASE TYPE 2, MITOCHONDRIAL-RELATED | 13 | 132 | 1.1E-16 |
| 3 | g9618.t12 | PANTHER | PTHR43437:SF3 | HYDROXYACYL-THIOESTER DEHYDRATASE TYPE 2, MITOCHONDRIAL-RELATED | 13 | 132 | 1.1E-16 |
| 1 | g9618.t12 | Pfam | PF01575 | MaoC like domain | 26 | 115 | 6.1E-5 |
| 4 | g9618.t12 | SUPERFAMILY | SSF54637 | Thioesterase/thiol ester dehydrase-isomerase | 12 | 132 | 7.0E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K22540 (3-hydroxyacyl-thioester dehydratase, animal type [EC:4.2.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed