General information for g9655.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein-cysteine N-palmitoyltransferase Rasp.
Parent gene
- The parent gene g9655 is located on chr_1: 4495780..4497725 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9655 | g9655.t1 | TTS | g9655.t1 | 4495777 | 4495777 |
| chr_1 | g9655 | g9655.t1 | isoform | g9655.t1 | 4495780 | 4497420 |
| chr_1 | g9655 | g9655.t1 | exon | g9655.t1.exon1 | 4495780 | 4497033 |
| chr_1 | g9655 | g9655.t1 | cds | g9655.t1.CDS1 | 4495780 | 4497033 |
| chr_1 | g9655 | g9655.t1 | exon | g9655.t1.exon2 | 4497093 | 4497262 |
| chr_1 | g9655 | g9655.t1 | cds | g9655.t1.CDS2 | 4497093 | 4497262 |
| chr_1 | g9655 | g9655.t1 | exon | g9655.t1.exon3 | 4497321 | 4497420 |
| chr_1 | g9655 | g9655.t1 | cds | g9655.t1.CDS3 | 4497321 | 4497420 |
| chr_1 | g9655 | g9655.t1 | TSS | g9655.t1 | 4497691 | 4497691 |
Sequences
>g9655.t1 Gene=g9655 Length=1524
ATGAATGGATACCTTTCAAATCAAGAATTGAGATTCTATTTCTGCTTCACAATAATCCTA
TATTTTATTATGATATATAATGTACAAACTATAAGTAATTCAAATCTTAAGGCATATAAG
TTTATGAATGATGGTTGGAAAATATTCAATAGAAAAGTAGATAATTATGATGTTGAATGG
CAAGTTTTCAAGGATTTAATAAGAAACTATTGGTATTGGTTTTTGATACATATTGTCTCG
GGAGAAATTTTTAGATTGTTTAAATTTAAGAATATTTCAATCTTACATTTCATCATTGGC
TTATCAGCATGTCTTCATATGTACAACATTCAATTTTTTATTATTCTATTATCACAATCA
CTTATAAGTTATATCATAAGCAGCGTGTTTAAGAAGAAAAGACACGTTTGGGCAATCACA
TGCCTTTGGCTCTTCATATTAAATGTTTTAAAATTTGAAAGTTATTTTTCAAATTTAATG
GACATTTTAAACATTGATGAATCAAAAGTTCATGACTTTCTCGTAATATTTGCTTGGTGC
TTACTGAAAAATACAAGTTTCAACCTAGAAAGAGTAACAAGACCAAATGAAGAAAATTTT
AATTTACTCAATTGTCTCGGGTATGTGTTTTACATACCAACATTTCATTTTGGACCAATC
ATTTCTTATACTCGTTACTTACACATGCTGGAAAATTTACATACAGAAGAGACTTATACG
ATGAATAATCATAAAGAGAGGATCAAAAAATTTCTACTAAAATTATTAAGATTTGCATTT
TGGTATGTGGTAACTGAAATTGGTTTACATTTCTTCTACATTCATTATATAGCTATGGAA
GTTGATTTAAAAACGTTAAACATTTTTGCTCTCTTTGGTCTTGGTTTTCTTCATGGACAA
TTTTTCAATAACAAATATATAATTCAGTATGGTTTACCAATTGCATTAGGAGAATTTGAG
CACATTCCTATGCCGAACAAACCGAAATGTATTTGTCGAATTCACAAATACAGCGACATG
TGGAAATTTTTCGATCATGGCTTGTACGAATTTCTATTTAAATATATTTATACAAAAATA
ACAACTCGATCTTCATCAGCATCACAAAAAATTTTTGCTAGCTTCATCACATTTTCTTTC
ATTTACATATGGCACGGTTTATTCGATTACATTCTTATATGGTCAATAGCCAATTATATA
TGTATTGTGATAGAAAAATTTATTTATAGCTATATTGAAAGTAAAAGATTTGAAATTAAA
GCACTTTCAATAATACGAACTGAAGAAAACTTACATCGACTGCGTGCATATATTGGAGCT
CATGTCCTCATTCCTGCTATTCTATCAAACTTTTTCTTCTTCGGCGGAACTGATTTTGGA
ATTGAATTTGTTAGAAGAACATACACTTTTGGGCTGTGGAATTATTTTAAAATTTCTGGT
ACGATATTTCTTTTGTATCCTATAGCAGAAGCAATCAAAAGATATGAACAAATGAACAAT
AAAAATGTAAAATATATTTATTAA
>g9655.t1 Gene=g9655 Length=507
MNGYLSNQELRFYFCFTIILYFIMIYNVQTISNSNLKAYKFMNDGWKIFNRKVDNYDVEW
QVFKDLIRNYWYWFLIHIVSGEIFRLFKFKNISILHFIIGLSACLHMYNIQFFIILLSQS
LISYIISSVFKKKRHVWAITCLWLFILNVLKFESYFSNLMDILNIDESKVHDFLVIFAWC
LLKNTSFNLERVTRPNEENFNLLNCLGYVFYIPTFHFGPIISYTRYLHMLENLHTEETYT
MNNHKERIKKFLLKLLRFAFWYVVTEIGLHFFYIHYIAMEVDLKTLNIFALFGLGFLHGQ
FFNNKYIIQYGLPIALGEFEHIPMPNKPKCICRIHKYSDMWKFFDHGLYEFLFKYIYTKI
TTRSSSASQKIFASFITFSFIYIWHGLFDYILIWSIANYICIVIEKFIYSYIESKRFEIK
ALSIIRTEENLHRLRAYIGAHVLIPAILSNFFFFGGTDFGIEFVRRTYTFGLWNYFKISG
TIFLLYPIAEAIKRYEQMNNKNVKYIY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9655.t1 | PANTHER | PTHR13285 | ACYLTRANSFERASE | 9 | 488 | 3.0E-79 |
| 1 | g9655.t1 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 138 | 413 | 3.4E-27 |
| 14 | g9655.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 30 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 32 | - |
| 21 | g9655.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 33 | 69 | - |
| 25 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 87 | - |
| 17 | g9655.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 88 | 93 | - |
| 31 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 115 | - |
| 20 | g9655.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 116 | 134 | - |
| 27 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 152 | - |
| 18 | g9655.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 153 | 254 | - |
| 26 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 279 | - |
| 23 | g9655.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 280 | 284 | - |
| 33 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 285 | 302 | - |
| 13 | g9655.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 303 | 366 | - |
| 32 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 385 | - |
| 22 | g9655.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 386 | 390 | - |
| 24 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 391 | 412 | - |
| 15 | g9655.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 413 | 432 | - |
| 29 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 433 | 453 | - |
| 19 | g9655.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 454 | 472 | - |
| 28 | g9655.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 473 | 492 | - |
| 16 | g9655.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 493 | 507 | - |
| 6 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
| 3 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 87 | - |
| 4 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 116 | - |
| 10 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 155 | - |
| 8 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 200 | 222 | - |
| 7 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 258 | 277 | - |
| 11 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 386 | - |
| 12 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 412 | - |
| 5 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 433 | 455 | - |
| 9 | g9655.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 492 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K24678 (protein-cysteine N-palmitoyltransferase HHAT [EC:2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
