General information for g9682.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Calcium/calmodulin-dependent protein kinase type II alpha chain.
Parent gene
- The parent gene g9682 is located on chr_1: 4607125..4608318 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9682 | g9682.t1 | isoform | g9682.t1 | 4607125 | 4608318 |
| chr_1 | g9682 | g9682.t1 | exon | g9682.t1.exon1 | 4607125 | 4607265 |
| chr_1 | g9682 | g9682.t1 | cds | g9682.t1.CDS1 | 4607125 | 4607265 |
| chr_1 | g9682 | g9682.t1 | exon | g9682.t1.exon2 | 4607433 | 4607438 |
| chr_1 | g9682 | g9682.t1 | cds | g9682.t1.CDS2 | 4607433 | 4607438 |
| chr_1 | g9682 | g9682.t1 | exon | g9682.t1.exon3 | 4607563 | 4607656 |
| chr_1 | g9682 | g9682.t1 | cds | g9682.t1.CDS3 | 4607563 | 4607656 |
| chr_1 | g9682 | g9682.t1 | exon | g9682.t1.exon4 | 4607722 | 4607905 |
| chr_1 | g9682 | g9682.t1 | cds | g9682.t1.CDS4 | 4607722 | 4607905 |
| chr_1 | g9682 | g9682.t1 | exon | g9682.t1.exon5 | 4608055 | 4608181 |
| chr_1 | g9682 | g9682.t1 | cds | g9682.t1.CDS5 | 4608055 | 4608181 |
| chr_1 | g9682 | g9682.t1 | exon | g9682.t1.exon6 | 4608253 | 4608318 |
| chr_1 | g9682 | g9682.t1 | cds | g9682.t1.CDS6 | 4608253 | 4608318 |
| chr_1 | g9682 | g9682.t1 | TSS | g9682.t1 | NA | NA |
| chr_1 | g9682 | g9682.t1 | TTS | g9682.t1 | NA | NA |
Sequences
>g9682.t1 Gene=g9682 Length=618
ATGTTGACTGTGAATCCACATAAACGCATCACTTCAGCAGAAGCACTCAAACATCCATGG
ATTTCACAACGTGAACGTGTAGCATCTGCCATTCATAGACAGGAGACTGTTGATTGTTTG
AAGAAATTCAATGCAAGAAGAAAATTAAAGGGCGCTATTCTAACGACAATGTTAGCAACG
AGAAATTTTTCGAGTAAATCGGTTGTAGCAAAAGTTAAAACAGATGGATCGGATGAGAAA
GTTGCAAAAGAATCATCCGATTCATCAAATAACAACGACGAATGCGATGACTCTGTTCGA
TTGAAGAGACAAGAAATTATCAAAGTGACAGAACAACTAATTGAGACTATCAATCGTGGT
GATTTCATTGCATACACGAAAATTTGTGATCCACATTTGACTGCATTTGAACCAGAATCG
ATGGGAAATCTCGTTGAAGGAATGGATTCCATAAATTTTATTTTGAAAATGTTTTGGACA
AGGAATTGCTCACTCTCATCAATCGGAAGAGACACGCATATTGGGCATAAACGTGACAAC
AAATGGCAAAATGTTCATCTTCATCGTAGTTTTCCAGTAAATCAAAGTATTGACACACAA
TTTGATCCAAGTAAATAA
>g9682.t1 Gene=g9682 Length=205
MLTVNPHKRITSAEALKHPWISQRERVASAIHRQETVDCLKKFNARRKLKGAILTTMLAT
RNFSSKSVVAKVKTDGSDEKVAKESSDSSNNNDECDDSVRLKRQEIIKVTEQLIETINRG
DFIAYTKICDPHLTAFEPESMGNLVEGMDSINFILKMFWTRNCSLSSIGRDTHIGHKRDN
KWQNVHLHRSFPVNQSIDTQFDPSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9682.t1 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 66 | 2.7E-8 |
| 9 | g9682.t1 | Gene3D | G3DSA:3.10.450.50 | - | 78 | 170 | 2.8E-21 |
| 7 | g9682.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 95 | - |
| 3 | g9682.t1 | PANTHER | PTHR24347:SF403 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II SUBUNIT BETA | 1 | 73 | 8.5E-56 |
| 5 | g9682.t1 | PANTHER | PTHR24347 | SERINE/THREONINE-PROTEIN KINASE | 1 | 73 | 8.5E-56 |
| 2 | g9682.t1 | PANTHER | PTHR24347:SF403 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II SUBUNIT BETA | 76 | 156 | 8.5E-56 |
| 4 | g9682.t1 | PANTHER | PTHR24347 | SERINE/THREONINE-PROTEIN KINASE | 76 | 156 | 8.5E-56 |
| 1 | g9682.t1 | Pfam | PF08332 | Calcium/calmodulin dependent protein kinase II association domain | 103 | 163 | 7.7E-19 |
| 6 | g9682.t1 | SUPERFAMILY | SSF54427 | NTF2-like | 103 | 192 | 1.27E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004683 | calmodulin-dependent protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
| GO:0005516 | calmodulin binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed