Gene loci information

Transcript annotation

  • This transcript has been annotated as Mediator of RNA polymerase II transcription subunit 24.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9718 g9718.t3 TSS g9718.t3 4785973 4785973
chr_1 g9718 g9718.t3 isoform g9718.t3 4786082 4788034
chr_1 g9718 g9718.t3 exon g9718.t3.exon1 4786082 4786130
chr_1 g9718 g9718.t3 cds g9718.t3.CDS1 4786082 4786130
chr_1 g9718 g9718.t3 exon g9718.t3.exon2 4786522 4787436
chr_1 g9718 g9718.t3 cds g9718.t3.CDS2 4786522 4787436
chr_1 g9718 g9718.t3 exon g9718.t3.exon3 4787504 4787751
chr_1 g9718 g9718.t3 cds g9718.t3.CDS3 4787504 4787751
chr_1 g9718 g9718.t3 exon g9718.t3.exon4 4787843 4788034
chr_1 g9718 g9718.t3 cds g9718.t3.CDS4 4787843 4787887
chr_1 g9718 g9718.t3 TTS g9718.t3 4788564 4788564

Sequences

>g9718.t3 Gene=g9718 Length=1404
ATGGATATTAAAAATAGACAGCAAAACATTCAAAAAATTCTTTTAAGAGCCTTTAGAGAA
AGATGGCCAGAATATCAATTTGGAATAAAAATCAAACAAGCTCTTCCATTAGCACTTCCA
GCAGACGCATATAATCTCACAGAAGTTTTATTGGATTTGAGTTTAATAGGAATTGGTGCA
AATAAACTTTTTCTCTCATATTTGAAGCATTCACTTCATTCTCATCTGATTAGTTATTCA
GCAGTAATTAAAAGAATAACTAAATATTCACAATATGAACGTTATTTCTGTCTCATTGCC
TTATTGGAATTTTTAATAAATATATCTGATACATGCTGTTGTAGAACAAAACCAGAAGAA
TCTTCTCTTATGAATGCTATTTTATCACTCGTTCATTGGCTTATTGAACTCAGTGAAAAG
ATATTTTTGAAAATAATGGAACAAAATAACATACCTACACATGAACAAAAGGTCTGTCTT
GAGAGAATCACCACACTCAACAATCGTATTGTCAATAATCAATTTTTAATGGGCATTATT
TACTTAGCTAAACTTGAGGATCGAGAACTCTATGAGAAATGCGTTATGAGCTATAAAAGA
ATTCATAGTTTAAGCAAAGAAGATTTTATTAAAGACTTTTATCAAATGATTTTTAACAAG
CTTGATCATATGCCGATGAAGGAATTAGAACCGAGATGTGTAGAATCGATTAGTGTTTGT
CTACAGCCTTTTATTGCAATTGAGGTATTGATAAATGCTAGTGCTGATGTAAGCGTTAAT
GTTTCAAAATTATTAATGATACAAAAGCTCAAAAAGTATTCGAATGCACGACTTTACCAT
GAGATCATAAGATCATGCTTCATTACACTTTGTCATGTGAAAGATGTCAATTATCGTATT
TGGGGTGCTTTCACGCTATGCAAAGTACCTTTGATTTTAAAACAACTTCATTTACAAGCT
AAAAACGAGAAGCTAGACTATTCAGAAGACGTTGTGAAAGCTTTTGAGATGCTACTTGAA
TGTACACCAATTTTAGATCTGCTTGACACGACTTTTGCTTGTAATTCAATTGAATGCATA
TTAGTTGAGTTGAGAAAACAAAACTTGGTTAATGATGATATCATGAAAAAACTTGTTGAT
AGGAGAATTTCTTCAATGGGAAAATTGGAAAAGTTCCAAATTTCGTCAACCTCACCTCCA
ATTGATAAATATTTATTGATAATCGAGCATTTTTGCTTTATTCAGTTGCTGCTGTAAAAG
GAATTCATCGAAAAATGATAAGTGGGCTGATTAAATGTAATGAGTCATGCAAAGAAATTT
CTGGTGAAGCAGCAAAATCAAAACAAAATATAATTTTCCGTTCCAATGCATTTGATGTGA
CATTTATTATGCTATTCTCAATCA

>g9718.t3 Gene=g9718 Length=418
MDIKNRQQNIQKILLRAFRERWPEYQFGIKIKQALPLALPADAYNLTEVLLDLSLIGIGA
NKLFLSYLKHSLHSHLISYSAVIKRITKYSQYERYFCLIALLEFLINISDTCCCRTKPEE
SSLMNAILSLVHWLIELSEKIFLKIMEQNNIPTHEQKVCLERITTLNNRIVNNQFLMGII
YLAKLEDRELYEKCVMSYKRIHSLSKEDFIKDFYQMIFNKLDHMPMKELEPRCVESISVC
LQPFIAIEVLINASADVSVNVSKLLMIQKLKKYSNARLYHEIIRSCFITLCHVKDVNYRI
WGAFTLCKVPLILKQLHLQAKNEKLDYSEDVVKAFEMLLECTPILDLLDTTFACNSIECI
LVELRKQNLVNDDIMKKLVDRRISSMGKLEKFQISSTSPPIDKYLLIIEHFCFIQLLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9718.t3 PANTHER PTHR12898 MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24 5 399 0
1 g9718.t3 Pfam PF11277 Mediator complex subunit 24 N-terminal 8 401 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016592 mediator complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed