General information for g9718.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Mediator of RNA polymerase II transcription subunit 24.
Parent gene
- The parent gene g9718 is located on chr_1: 4789423..4799394 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9718 | g9718.t5 | TSS | g9718.t5 | 4788028 | 4788028 |
| chr_1 | g9718 | g9718.t5 | isoform | g9718.t5 | 4788034 | 4788857 |
| chr_1 | g9718 | g9718.t5 | exon | g9718.t5.exon1 | 4788034 | 4788857 |
| chr_1 | g9718 | g9718.t5 | cds | g9718.t5.CDS1 | 4788034 | 4788855 |
| chr_1 | g9718 | g9718.t5 | TTS | g9718.t5 | 4789602 | 4789602 |
Sequences
>g9718.t5 Gene=g9718 Length=824
ATGCAAAAATGTGGTGGCATAGATAAATTTCCTGAAAAGAGCAATGACTATTTTTTCGAA
AAGTGGATTCGTGATGGATATATCGATTTACAAAGTAAACCTAGATCTCCATTAAGTGTC
GTTAAAATGAGTGATTCTAGACTTGAAGAACTTATTGCTTACTTTAATGATATCAATCAA
CAACCATCACCACCAATTTCAAATAAATTGAGTGAAATATGTTGGAGCATTCCTTCTTTA
TTATATAACTGCATCATTGCTTGGGAAAAAGATATGGTCAAGCCAGCAGCTGTTAAAAAT
ATTATTGACAATATGCGCTCAAAGAACTGTTGCTTTGCTATTGTTGCTGCATCTTGGCTC
TGTGCTTATATGAAAATTCTCAAAGATGATGAACTAGCTAAACCAAAAGTTATGTTGCAA
CAGTTAATGAATCCATTAGATGAATCTATAATGAAGCAAGAAACTTTCAGTGAACGTTTT
CATCTTACACAGGAAATTATTATGAAATTATCACGTTCAGTACTTGATACAAAAAAAGCA
ACAAACAATAGCAATGATTCATTATTCAGTGATCAATGGAAAGATATAACTACGAAAAAA
TGGCTGTCGTATGAAGTTGCTATAAATTTAGATGAGATTCTTAAATCATGCGGATCATTT
TGGATAATGAAGAATCTTGTTGATGAAATAATGCACACAAAATTCATAAAAGATATGGAA
AATACATTAGATATTGCATTTGCAATAATGCATTTGAATATTGAATCATGCACTGAAACT
CTCTTAAAAGACATTCTCATTTCAATGCTCTTCAATAAAAATCA
>g9718.t5 Gene=g9718 Length=274
MQKCGGIDKFPEKSNDYFFEKWIRDGYIDLQSKPRSPLSVVKMSDSRLEELIAYFNDINQ
QPSPPISNKLSEICWSIPSLLYNCIIAWEKDMVKPAAVKNIIDNMRSKNCCFAIVAASWL
CAYMKILKDDELAKPKVMLQQLMNPLDESIMKQETFSERFHLTQEIIMKLSRSVLDTKKA
TNNSNDSLFSDQWKDITTKKWLSYEVAINLDEILKSCGSFWIMKNLVDEIMHTKFIKDME
NTLDIAFAIMHLNIESCTETLLKDILISMLFNKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9718.t5 | PANTHER | PTHR12898 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24 | 12 | 272 | 0 |
| 1 | g9718.t5 | Pfam | PF11277 | Mediator complex subunit 24 N-terminal | 13 | 273 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016592 | mediator complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
