General information for g9723.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NEDD8-conjugating enzyme Ubc12.
Parent gene
- The parent gene g9723 is located on chr_1: 4799394..4800249 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9723 | g9723.t8 | isoform | g9723.t8 | 4798828 | 4800249 |
| chr_1 | g9723 | g9723.t8 | exon | g9723.t8.exon1 | 4798828 | 4799540 |
| chr_1 | g9723 | g9723.t8 | TTS | g9723.t8 | 4798855 | 4798855 |
| chr_1 | g9723 | g9723.t8 | cds | g9723.t8.CDS1 | 4799394 | 4799540 |
| chr_1 | g9723 | g9723.t8 | exon | g9723.t8.exon2 | 4799601 | 4799689 |
| chr_1 | g9723 | g9723.t8 | cds | g9723.t8.CDS2 | 4799601 | 4799689 |
| chr_1 | g9723 | g9723.t8 | exon | g9723.t8.exon3 | 4799753 | 4799831 |
| chr_1 | g9723 | g9723.t8 | cds | g9723.t8.CDS3 | 4799753 | 4799831 |
| chr_1 | g9723 | g9723.t8 | exon | g9723.t8.exon4 | 4799900 | 4800249 |
| chr_1 | g9723 | g9723.t8 | cds | g9723.t8.CDS4 | 4799900 | 4799959 |
| chr_1 | g9723 | g9723.t8 | TSS | g9723.t8 | 4800324 | 4800324 |
Sequences
>g9723.t8 Gene=g9723 Length=1231
ATGATAAAACTCTTTTCTCTAAAACAACAGAAAAAGGAAGGTGAGAGTGGTAATCAACAA
AAATCAACAAGAACTGCCGCCCAGCTGCGAATTACAAAAGGTAAATCAAAAAAATGATTC
AGATTAGATTTAGGAAGTGAAAATTTTCACTAAACAAAAGAAGAAAATTTCAATCGATTT
CATCTTATTTGCTTTATCTCTGTATTTTTTCAATAGACATTAATGAACTCAACCTTCCGC
GTACATGTACAACAAATTTTCCAGATCCAAATGATTTGTTAAACTTTAAAATGATTATAT
GCCCTGACGAGGGATATTATAGAGGTGGTCGCTTTGTTTTTAACTTTAAGGTTGGCCCAA
ATTATCCCCATGAACCTCCAAAAGTAAAATGTGAAACAAAAGTGTATCATCCAAATATTG
ATTTAGAAGGAAATGTTTGTTTAAATATATTACGTGAGGACTGGAAACCTGTTTTAACAA
TTAACTCGATCGTTTATGGATTACAATATCTCTTCTTGGAACCCAATGCTGAAGATCCGT
TAAATAAAGAAGCTGCAGATGTGTTGCAGAACAATCGTCGTCTTTTTGAGCATAATGTTA
CAAAAGCAATGCGTGGAGCATATATTGGTGACGTTTATTTTGATCGCTGTCTCAACTCAA
ACTGATATTCTAACACCACCGTCAGCATAAACTCAAAAACTTTTTTCATCATTAACTGTT
TTATTATTTTATTAATCGGTGGCTCGTATATAAAACTTATTATTTAAGATGAAAGTTTCC
GTGAACTTACTTTTTTAGAAAATTAAAAACACTGATTTTTTGATCTACCTATTTGCCTAA
CTAGTAAATTTCATTTCTTTTCTGTCATTTTTATAGAAATGTAACTTGTATCCAACTCAT
AAATATTAAGAGAAATTATAAAATTTCTTTTTGAATATTTATGTCAATTTCTGTTTTACT
TACACTAAGAACATAATATGATACAATGCTGATGATCTTGTCCAAACGTACACCTTCTTT
GATAAAAAAAATACTAATCCTTCTCAAAAAACTTCTTTTTTTCTCTTTTCAAAATGCATA
TATTTTTTAAAAAAATCCCTTTACTATTAAAAGCTCGTGTTATGTCATAATAAAACTAAT
ATTAAAAAGATGGAAATGATAAAAAAATCAAGCTAAATAAAATATTTAAAATGAAAATTC
TCTGAAAAAAAAATCATTTGAAATAGTTTCT
>g9723.t8 Gene=g9723 Length=124
MIICPDEGYYRGGRFVFNFKVGPNYPHEPPKVKCETKVYHPNIDLEGNVCLNILREDWKP
VLTINSIVYGLQYLFLEPNAEDPLNKEAADVLQNNRRLFEHNVTKAMRGAYIGDVYFDRC
LNSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9723.t8 | CDD | cd00195 | UBCc | 2 | 103 | 4.69239E-37 |
| 5 | g9723.t8 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 124 | 2.1E-51 |
| 2 | g9723.t8 | PANTHER | PTHR24068:SF382 | NEDD8-CONJUGATING ENZYME UBC12-LIKE-RELATED | 3 | 110 | 1.3E-51 |
| 3 | g9723.t8 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 3 | 110 | 1.3E-51 |
| 1 | g9723.t8 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 1 | 105 | 2.8E-37 |
| 7 | g9723.t8 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 39 | 54 | - |
| 9 | g9723.t8 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 1 | 101 | 29.063 |
| 8 | g9723.t8 | SMART | SM00212 | ubc_7 | 1 | 112 | 3.0E-23 |
| 4 | g9723.t8 | SUPERFAMILY | SSF54495 | UBC-like | 2 | 120 | 1.38E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10579 (ubiquitin-conjugating enzyme E2 M)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
