Gene loci information

Transcript annotation

  • This transcript has been annotated as Purine nucleoside phosphorylase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9730 g9730.t34 TTS g9730.t34 4813145 4813145
chr_1 g9730 g9730.t34 isoform g9730.t34 4813302 4814425
chr_1 g9730 g9730.t34 exon g9730.t34.exon1 4813302 4813414
chr_1 g9730 g9730.t34 cds g9730.t34.CDS1 4813411 4813414
chr_1 g9730 g9730.t34 exon g9730.t34.exon2 4813554 4813657
chr_1 g9730 g9730.t34 cds g9730.t34.CDS2 4813554 4813657
chr_1 g9730 g9730.t34 exon g9730.t34.exon3 4813715 4813916
chr_1 g9730 g9730.t34 cds g9730.t34.CDS3 4813715 4813916
chr_1 g9730 g9730.t34 exon g9730.t34.exon4 4813976 4814425
chr_1 g9730 g9730.t34 cds g9730.t34.CDS4 4813976 4814235
chr_1 g9730 g9730.t34 TSS g9730.t34 4815341 4815341

Sequences

>g9730.t34 Gene=g9730 Length=869
TTACACATACGAAACAATCATCGAGATAGCAAACTTCCTTCTACAAAGAACAAGCATTCG
CCCAAAAATTGGTATCATTTGCGGTTCTGGTCTTGGACATTTGGCAGAAAATTTGACTGA
AGCTGATTCATTTCCATATGAAGAAATTCCAAATTTTCCCGTCTCAACAGTTGCAGGACA
TGCAGGCCGAATGGTATTTGGTTATTTGAATGGCATTGAAGTGATGTGTATGCAAGGAAG
ATTTCATTATTATGAAGGATATGCTTTAAGTACATGCTCAATGCCTGTAAGAGTCATGAA
ATTCTGCGGATGCACACACTTGATTGCTACAAATGCTGCTGGTGGTTTAAACAGTTCATA
TAATGTTGGTGACATCATGATTGTTAAAGATCACATAAATATTATGGGATTTGCAGGAAA
TTCACCTTTGCAAGGACCTAATGATCATAGATTTGGACCACGATTTCCACCGATGAATAA
AGCTTACGATCCTGAATTAATCGAAATTGCACAAAATATTTCTAAAGAGATGGGAATGGA
AAATGACACTCACACAGGTGTATACATTTGTCTAGGTGGACCAAGTTATGAAACAGTCGC
TGAATTAAAAATGTGGAGTATTCTAGGTGTTGATGCTGTCGGCATGTCAACTGTTCATGA
AGTAATTACAGCTCGTCATTGCGATCTGAAAGTTTTTGCATTCTCACTAATTACAAATAA
ATGCATAACCGAGTATGAAACAGAAGAAGAAGGTAACTAATCATGAGGAGGTTATAACTA
CAGGTTCTAAGAGACAAAATGTGTTGACAAACTTTGTTACTCGTATGGTAGAAAATATAA
ACAGTCTAATCATTAACGATTCAATGTAA

>g9730.t34 Gene=g9730 Length=189
MVFGYLNGIEVMCMQGRFHYYEGYALSTCSMPVRVMKFCGCTHLIATNAAGGLNSSYNVG
DIMIVKDHINIMGFAGNSPLQGPNDHRFGPRFPPMNKAYDPELIEIAQNISKEMGMENDT
HTGVYICLGGPSYETVAELKMWSILGVDAVGMSTVHEVITARHCDLKVFAFSLITNKCIT
EYETEEEGN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g9730.t34 CDD cd09009 PNP-EcPNPII_like 1 179 0
4 g9730.t34 Gene3D G3DSA:3.40.50.1580 - 1 189 0
2 g9730.t34 PANTHER PTHR11904 METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE 1 187 0
1 g9730.t34 Pfam PF01048 Phosphorylase superfamily 2 185 0
3 g9730.t34 SUPERFAMILY SSF53167 Purine and uridine phosphorylases 2 184 0
5 g9730.t34 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 1 183 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004731 purine-nucleoside phosphorylase activity MF
GO:0009116 nucleoside metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed