Gene loci information

Transcript annotation

  • This transcript has been annotated as Purine nucleoside phosphorylase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9730 g9730.t39 TTS g9730.t39 4813145 4813145
chr_1 g9730 g9730.t39 isoform g9730.t39 4813302 4815255
chr_1 g9730 g9730.t39 exon g9730.t39.exon1 4813302 4813339
chr_1 g9730 g9730.t39 cds g9730.t39.CDS1 4813331 4813339
chr_1 g9730 g9730.t39 exon g9730.t39.exon2 4813715 4813916
chr_1 g9730 g9730.t39 cds g9730.t39.CDS2 4813715 4813916
chr_1 g9730 g9730.t39 exon g9730.t39.exon3 4813976 4814425
chr_1 g9730 g9730.t39 cds g9730.t39.CDS3 4813976 4814425
chr_1 g9730 g9730.t39 exon g9730.t39.exon4 4815134 4815255
chr_1 g9730 g9730.t39 cds g9730.t39.CDS4 4815134 4815255
chr_1 g9730 g9730.t39 TSS g9730.t39 4815341 4815341

Sequences

>g9730.t39 Gene=g9730 Length=812
ATGCCAGAAGAAATAATTCCAGGATATTTTAATGGAAATGTAGTTAACAGCAAAGTTGCA
GGCAATTCATCTCCCATACCACCGAGAACTCCTTCACCAACTACTTCAACATCCCTGGAT
ATTTACACATACGAAACAATCATCGAGATAGCAAACTTCCTTCTACAAAGAACAAGCATT
CGCCCAAAAATTGGTATCATTTGCGGTTCTGGTCTTGGACATTTGGCAGAAAATTTGACT
GAAGCTGATTCATTTCCATATGAAGAAATTCCAAATTTTCCCGTCTCAACAGTTGCAGGA
CATGCAGGCCGAATGGTATTTGGTTATTTGAATGGCATTGAAGTGATGTGTATGCAAGGA
AGATTTCATTATTATGAAGGATATGCTTTAAGTACATGCTCAATGCCTGTAAGAGTCATG
AAATTCTGCGGATGCACACACTTGATTGCTACAAATGCTGCTGGTGGTTTAAACAGTTCA
TATAATGTTGGTGACATCATGATTGTTAAAGATCACATAAATATTATGGGATTTGCAGGA
AATTCACCTTTGCAAGGACCTAATGATCATAGATTTGGACCACGATTTCCACCGATGAAT
AAAGCTTACGATCCTGAATTAATCGAAATTGCACAAAATATTTCTAAAGAGATGGGAATG
GAAAATGACACTCACACAGGTGTATACATTTGTCTAGGTGGACCAAGTTATGAAACAGTC
GCTGAATTAAAAATGTGGAGTATTCTAGGTGTTGATGCTGTCGGCATGTCAACTAAAATA
TAAACAGTCTAATCATTAACGATTCAATGTAA

>g9730.t39 Gene=g9730 Length=260
MPEEIIPGYFNGNVVNSKVAGNSSPIPPRTPSPTTSTSLDIYTYETIIEIANFLLQRTSI
RPKIGIICGSGLGHLAENLTEADSFPYEEIPNFPVSTVAGHAGRMVFGYLNGIEVMCMQG
RFHYYEGYALSTCSMPVRVMKFCGCTHLIATNAAGGLNSSYNVGDIMIVKDHINIMGFAG
NSPLQGPNDHRFGPRFPPMNKAYDPELIEIAQNISKEMGMENDTHTGVYICLGGPSYETV
AELKMWSILGVDAVGMSTKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g9730.t39 CDD cd09009 PNP-EcPNPII_like 45 258 0
4 g9730.t39 Gene3D G3DSA:3.40.50.1580 - 42 259 0
2 g9730.t39 PANTHER PTHR11904 METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE 42 258 0
6 g9730.t39 PIRSF PIRSF000477 PurNPase 37 259 0
1 g9730.t39 Pfam PF01048 Phosphorylase superfamily 63 258 0
3 g9730.t39 SUPERFAMILY SSF53167 Purine and uridine phosphorylases 41 258 0
5 g9730.t39 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 63 258 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004731 purine-nucleoside phosphorylase activity MF
GO:0009116 nucleoside metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed