General information for g9736.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as BAI1-associated protein 3.
Parent gene
- The parent gene g9736 is located on chr_1: 4848848..4863006 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9736 | g9736.t1 | isoform | g9736.t1 | 4848848 | 4863006 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon1 | 4848848 | 4848936 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS1 | 4848848 | 4848936 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon2 | 4849544 | 4849790 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS2 | 4849544 | 4849790 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon3 | 4849859 | 4849953 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS3 | 4849859 | 4849953 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon4 | 4850014 | 4850509 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS4 | 4850014 | 4850509 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon5 | 4850710 | 4851480 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS5 | 4850710 | 4851480 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon6 | 4851941 | 4851992 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS6 | 4851941 | 4851992 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon7 | 4852062 | 4852843 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS7 | 4852062 | 4852843 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon8 | 4853056 | 4853257 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS8 | 4853056 | 4853257 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon9 | 4853336 | 4853624 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS9 | 4853336 | 4853624 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon10 | 4858304 | 4858472 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS10 | 4858304 | 4858472 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon11 | 4858549 | 4858786 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS11 | 4858549 | 4858786 |
| chr_1 | g9736 | g9736.t1 | exon | g9736.t1.exon12 | 4862738 | 4863006 |
| chr_1 | g9736 | g9736.t1 | cds | g9736.t1.CDS12 | 4862738 | 4863006 |
| chr_1 | g9736 | g9736.t1 | TSS | g9736.t1 | NA | NA |
| chr_1 | g9736 | g9736.t1 | TTS | g9736.t1 | NA | NA |
Sequences
>g9736.t1 Gene=g9736 Length=3699
ATGACAATCTATCATTTCAAATCTCAAATTGATCATATTAAAAAGGTTCCATCACCATCA
GCGAGTATTGGACAGGTCCCAAGCAGCAGTTTACGTCGACCGTCTTCGAGAGGAACAATC
GAGACAATGGTGCCATCACGACAAGGTTCCTTCCGTCAACAACAGCGACATTCACCCGTA
CAACCAGTAGCTGCTTTAGATAGACCACCATTAGCATTTTGTAAAAGACGCATGTCATGG
CCAGAAATTGATGCCTCATCCACATCAAGAGTTCAAGAGAGCGATGGTTCATTTTTTGAA
TCATTTACTGCACTATCGTGGAAACGTGAGAATCGTCGAATGTCAGCAGTGCGTGCTGCT
GAACAACGTGCAGAACAAATGCCAATTGATGAGAAGGAAGCTATTAAAGAGGATGACATC
GAAACATTGAATGAGCGTGAGCAGCTTTATTGTGAAGTTTTATATACAATAGCAAACTGT
GTTGGATGCCAACAGCCTGGCACACAATTTGCTCATTATAAAGATGAAATGTATATAACA
GCACAGCGTGCTTTTGGTGTCTCACCTGACCGTCATTTTCGGCTCCTCCATGCAGCCGTC
GAAGAAAAGCCCAAAATAATCGTCTTATCGGTGATTGTACAAGAGGCTGAAGGTCTTGAA
GCAAAAGATGCAAATGGTTTCAGCGATCCTTATTGCATGCTTGGCATCACTTCGATGGGT
TGTCAACCGCCACCACCGCTATCACCTCAACCGGCAACAACACCAAGAGCGATGCTTCCT
GAACCGAACATGGATAGCCTCGAGTCTCCCGAAAGTAAACTTCGCAAACACGGCAGCTTC
CGTTTGAGTTTTAAACGTAAAAATCAACACAGAGATTCAATGGGACCAATGCCGGCAAAA
ATTATCAAAGCAACATCAGTGAAGCAACATACATTAAGTCCCAAATGGAATGAGAAATTT
AAATTCGATGTTGACGACATGAACACTGACCAATTACATCTCGACATTTGGGACCATGAT
GATGAAAGTAGTGTTATGGATGCTGTATCGAGATTGAATGAAGTCAGAGGTGTTCGTGGA
TTGGGACGATTTTTCAAACAAGTTTGTCAGTCAGCAAGACAAGGATCACAAGATGATTTT
CTTGGCAGCATCAATATTAATATTTCGGAAATTCCAAGCACTGGTCTCGAAGGCTGGTTT
AAGCTCGAAGGTCGAAGTCATCGAAGTAACGTTCAAGGACGAATTCGTCTAAAACTTTGG
CTTTCGACACGCGATGACCATGGACAATCAGAAGATGATATATTGGTAGAGATAAGAAAA
TTGGAAAGGTGCTATGTGGTATTTATGCAGCACGAATTGTCAACACACGAACCATCATGG
AGTTGGAGTGGCGATATACAAGGAACAGCATTGACAATTTTACATCAAATGGCTGTGCAA
GCTGACTTATCTGAATTACAATGTGCAATGGCTCGTTTTGTGGCTGTTTTAGTTCTCAAT
AGTAGGACACCACTTGATCCAAAATTTATTCATCGAATGATGCTCGAATTAGATCGCTTT
TGGGTGCAAGTATCAATGGAACCACTCTGTCATGAACTTGAACAATGGCTGGCAAAAGCT
ATGCAAAGATTTGTTGAAATCTCACTCAATCAAATGCGTCGTCATAGAGAAATTTTTCCA
GCACTTCATCCGCCTTCTTTAGTGAGATTGGAATTTTTGCTTCGATGTTTGGGACTACTT
GGTTCAATGCGTGCATTTCGTCAAGTTTGCCCATTCAGTAAGGGAATTCGAGGTGAAATT
GTCAATTATTTACGTAAGGGTTCAGTATTATGGGCTCAAAATCAACTCCGCGATGCTGTT
AGGCATGAAAATCCACTCGTTCATTTCACATCAACATTACTCGCTGACTTACAAACAGGT
CTCAGTTATTACCATCCAATTTTCGACAACACCAATGGAGTTCAATATTTTAGTATCGTA
TATAAACAATTTGATCAAATTCTAGCAGATGAAGTATCAATGAGAATGGAAACAGGTCAA
ATACCAGGTGCACCAACAAGTCAATTTGCAGTACTAGAAGGCCGTGAGCAGATTGATACG
CGTCCATTTGAACTTTATTTTGCATTGCAAGAATTCTCAGTATTGAAACAACATTTATCG
GTTCAACCTCAACCACCAGAGAAGCCTTTAGGCATACAAAATTACCATTTGTGGTTTGAA
TCAATCATTCAACTGTGGGTTGCCGTCAGTAAAAATAAAGCACTCAATCGTGTACGCACC
GCTATTTCTATGGATGAAATATGTGAAGGAGAAAAGATTGTGCGTCATAGCACATCATCT
GTTGATATTGCGAGTGTCATTTATCAAATGAAAGAATTTTGGAAACTTTTGGCATGGCCT
GATAGCAATTCTGCAGTGCATTTTGAAACACAATTTATCGATGCTGCTTGCTCAACTGCT
CTCCATTATTGCGATCTTGCTCATCAAAATTTGATTGATAGTGGCTATTATGAGCAAACA
GGACCATTTAGAGTTTCCGATGAACTTTGTGTGACAGTAAACAATTTAGAGTATGTGAGA
CGAGCACTTGCTGAATTTAGAGGAAGTGATTCAACGCCAGTTCAGCCTCATCCACAACAA
CAACTTAATGTCATGAATCATGAGAATATGCTTGAAAATACACTCTTTCAACTTGAGAGG
ACAACTGAAAGAATTATGAGTCGCATCAGCATTGTTATGCAAGGACCAATGCAAAAATCT
GTTTTTCATTTGGCATGGTCACCAGATTCATTACCAGCAGCACAAGCCATCATTCCATTA
CTTGAATATCTTGATCAAAATTTATCAGCCCTAAACAGTGCCCTCTTAACAAAAAACTTT
CATCGTGCATTAAATATTATTTGGCTTTTGGTATTGAGTGAACTTGCAGCACAAATGGAT
TCAGCAGGTGAGAAACCAGCAAATTTTCATGATCGTCTGTACGATGCACTACAAATGCTG
GTTGAATTTATTCACGCCGAGGGACTTGGTCTGACACATGAAACGATAAAAAATGAAGAT
TATTGGCGAGTCGAGCAACGTCTTCAATATCATAAAAGTAATACAGAACATTTGATTGAT
TTGTTTTATATGCAACGATTGCAAGAGCAAATTAGATTACAAAATTCAATTGAACCAGCA
CAATATGGAATTTTATCAGTGCGAGCATATTTCAATCATGACTCGCTTTGTGTTGAAGTG
TTGCGTGCTCAAAATGTCATTCCACTAGATCCTAATGGTTTTTCTGATCCTTTTGTAATA
ATTGAGCTACTGCCGAGAAGAGTTTTTCAACATTGTTCAGAACAACAAACACATGTTCAT
AAGAGAACATTGAATCCAGTATTTGATGAATGCTTTGAATTTGGGACAATAACACTCGAA
CAATGTACACAGGAATGCGCAATGGTGGGCTTTACTGTGATGGACCATGACGTAATAACA
GCAAATGATTTTGCTGGTGAAGCTTTTCTCTCGCTCAACAACATTCCTGGTGTATCAGAA
TGTGGAAGTATTGAAAATTTTCATGGCCTCAAACCTATTGATTTGGTTTTGATGCAACAA
AAAGATAAACATCATCCAATCTTTCAAATTCTCGAAACAAGAACAACAGATAAAGTAGCT
CTCGACTTTGTGCGAAAACAAAAGAGCAGAGTAACCTAA
>g9736.t1 Gene=g9736 Length=1232
MTIYHFKSQIDHIKKVPSPSASIGQVPSSSLRRPSSRGTIETMVPSRQGSFRQQQRHSPV
QPVAALDRPPLAFCKRRMSWPEIDASSTSRVQESDGSFFESFTALSWKRENRRMSAVRAA
EQRAEQMPIDEKEAIKEDDIETLNEREQLYCEVLYTIANCVGCQQPGTQFAHYKDEMYIT
AQRAFGVSPDRHFRLLHAAVEEKPKIIVLSVIVQEAEGLEAKDANGFSDPYCMLGITSMG
CQPPPPLSPQPATTPRAMLPEPNMDSLESPESKLRKHGSFRLSFKRKNQHRDSMGPMPAK
IIKATSVKQHTLSPKWNEKFKFDVDDMNTDQLHLDIWDHDDESSVMDAVSRLNEVRGVRG
LGRFFKQVCQSARQGSQDDFLGSININISEIPSTGLEGWFKLEGRSHRSNVQGRIRLKLW
LSTRDDHGQSEDDILVEIRKLERCYVVFMQHELSTHEPSWSWSGDIQGTALTILHQMAVQ
ADLSELQCAMARFVAVLVLNSRTPLDPKFIHRMMLELDRFWVQVSMEPLCHELEQWLAKA
MQRFVEISLNQMRRHREIFPALHPPSLVRLEFLLRCLGLLGSMRAFRQVCPFSKGIRGEI
VNYLRKGSVLWAQNQLRDAVRHENPLVHFTSTLLADLQTGLSYYHPIFDNTNGVQYFSIV
YKQFDQILADEVSMRMETGQIPGAPTSQFAVLEGREQIDTRPFELYFALQEFSVLKQHLS
VQPQPPEKPLGIQNYHLWFESIIQLWVAVSKNKALNRVRTAISMDEICEGEKIVRHSTSS
VDIASVIYQMKEFWKLLAWPDSNSAVHFETQFIDAACSTALHYCDLAHQNLIDSGYYEQT
GPFRVSDELCVTVNNLEYVRRALAEFRGSDSTPVQPHPQQQLNVMNHENMLENTLFQLER
TTERIMSRISIVMQGPMQKSVFHLAWSPDSLPAAQAIIPLLEYLDQNLSALNSALLTKNF
HRALNIIWLLVLSELAAQMDSAGEKPANFHDRLYDALQMLVEFIHAEGLGLTHETIKNED
YWRVEQRLQYHKSNTEHLIDLFYMQRLQEQIRLQNSIEPAQYGILSVRAYFNHDSLCVEV
LRAQNVIPLDPNGFSDPFVIIELLPRRVFQHCSEQQTHVHKRTLNPVFDECFEFGTITLE
QCTQECAMVGFTVMDHDVITANDFAGEAFLSLNNIPGVSECGSIENFHGLKPIDLVLMQQ
KDKHHPIFQILETRTTDKVALDFVRKQKSRVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9736.t1 | CDD | cd08676 | C2A_Munc13-like | 181 | 402 | 2.38251E-60 |
| 10 | g9736.t1 | CDD | cd04009 | C2B_Munc13-like | 1062 | 1192 | 3.68391E-57 |
| 8 | g9736.t1 | Gene3D | G3DSA:1.10.357.50 | - | 731 | 901 | 4.6E-18 |
| 9 | g9736.t1 | Gene3D | G3DSA:2.60.40.150 | - | 1058 | 1180 | 2.6E-26 |
| 14 | g9736.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 40 | - |
| 16 | g9736.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 40 | - |
| 15 | g9736.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 295 | - |
| 4 | g9736.t1 | PANTHER | PTHR45999 | UNC-13-4A, ISOFORM B | 135 | 1226 | 0.0 |
| 5 | g9736.t1 | PANTHER | PTHR45999:SF4 | UNC-13-4A, ISOFORM B | 135 | 1226 | 0.0 |
| 3 | g9736.t1 | Pfam | PF00168 | C2 domain | 209 | 236 | 0.28 |
| 2 | g9736.t1 | Pfam | PF00168 | C2 domain | 302 | 402 | 1.2E-9 |
| 1 | g9736.t1 | Pfam | PF00168 | C2 domain | 1075 | 1175 | 2.0E-16 |
| 17 | g9736.t1 | ProSiteProfiles | PS50004 | C2 domain profile. | 209 | 365 | 9.924 |
| 20 | g9736.t1 | ProSiteProfiles | PS51258 | Munc13-homology domain 1 (MHD1) profile. | 703 | 827 | 21.187 |
| 19 | g9736.t1 | ProSiteProfiles | PS51259 | Munc13-homology domain 2 (MHD2) profile. | 934 | 1042 | 21.083 |
| 18 | g9736.t1 | ProSiteProfiles | PS50004 | C2 domain profile. | 1075 | 1169 | 15.844 |
| 13 | g9736.t1 | SMART | SM00239 | C2_3c | 208 | 400 | 1.0E-15 |
| 12 | g9736.t1 | SMART | SM00239 | C2_3c | 1075 | 1184 | 3.2E-14 |
| 7 | g9736.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 190 | 420 | 1.84E-21 |
| 6 | g9736.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1064 | 1176 | 4.76E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K15621 (BAI1-associated protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed