General information for g9749.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Membrane alanyl aminopeptidase.
Parent gene
- The parent gene g9749 is located on chr_1: 4986195..4987568 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9749 | g9749.t1 | TTS | g9749.t1 | 4986132 | 4986132 |
| chr_1 | g9749 | g9749.t1 | isoform | g9749.t1 | 4986195 | 4987568 |
| chr_1 | g9749 | g9749.t1 | exon | g9749.t1.exon1 | 4986195 | 4986295 |
| chr_1 | g9749 | g9749.t1 | cds | g9749.t1.CDS1 | 4986195 | 4986295 |
| chr_1 | g9749 | g9749.t1 | exon | g9749.t1.exon2 | 4986353 | 4986427 |
| chr_1 | g9749 | g9749.t1 | cds | g9749.t1.CDS2 | 4986353 | 4986427 |
| chr_1 | g9749 | g9749.t1 | exon | g9749.t1.exon3 | 4986484 | 4986716 |
| chr_1 | g9749 | g9749.t1 | cds | g9749.t1.CDS3 | 4986484 | 4986716 |
| chr_1 | g9749 | g9749.t1 | exon | g9749.t1.exon4 | 4986778 | 4987568 |
| chr_1 | g9749 | g9749.t1 | cds | g9749.t1.CDS4 | 4986778 | 4987568 |
| chr_1 | g9749 | g9749.t1 | TSS | g9749.t1 | NA | NA |
Sequences
>g9749.t1 Gene=g9749 Length=1200
ATGATTTTGAATATTCAACAAGTTGGTTATTATCGAGTTGACTATGACACTGCATTATGG
CAAGCAATCATTTCACAATTGAATGAAAATCATGAAGAAATTCATTCAATCAATCGTGCA
ATTTTACAGGAAGAAATTGCTTTAGCTTGGACTGAATTTAATAGAGTTACAGTTGCTCAT
ATTTTGGAAATTTTAAATTATTTTGATAAGGAATTCGATTCAATCACATGGAGCAAAGCT
TATGATAATTTGAACAGATTAAATGAAAGACTTTTTGGAACATATGCTTATGATACATTT
TTGGAATTTGTTGTTAGAATTACAGAAAATCAAATTAATGAAACTGGCTACAATGGATTC
GATGGTGAAGATCCAGAAAGAACTTCATTGAGATCATTCATAAAACCATGGAATTGTTGG
GCAAATTATGAAAAATGTTCAGTTCAAGATCATGCAGAATTTTTGAAATATTACATTGAT
GGAAATCAACTTGCAGTTTTTGATTATTGCAATGCAATTAAACTTGTGAATAAAACAATG
TTTGATGATATTTTGAACAATGTTTTAACCAACAGTGTATTTGCGAATAGAATACTTTTC
TTGGCTAATCTTGGTTGCTCTCCAGTAGCCGAAAATTTACAAAATTTGCTTAATTCTATT
TTAAATGTCTTAAATACTTTGACAAGACCTGAAAGAGCTCAAATAATTGCAAATACATAC
ACAAAAAGTTCAATTGCTTTAGAAATAACTCTTGATTTTCTCGATCAAAATGCTGCAGCT
CTTTACGATATAATGGGAGAATTTATTGAACAACTTTTAATGAGTATGCCTTCATACATC
AATGGACAAAAAAATACAGCAAAATATCAAAGCATTTTGACTAAATTCCATGGATTTGGT
TTAATTTCAAATGAAAATCTTAATAAAGCAACTGATTCTGTTGCTAGTAATAATGCTTGG
ATTACTCAAAACTATAAGAATATTTTGGACTATTTTGGTCTTGAAGAAATCACAGATCCA
CCAACTACTACTCCAAACACAACCCCAATTGCTTCAACACCATCACAAACATCAACTGCC
GCAAGTGATGAACCAACAACACTAGCACCAACAACAACAACACAAGGAGCAAGTTCAATT
ATGGTTTCGATGTTCATCATGTTCTTCTGTGTTATTATAAGTTTCATTTTTACTAAATAA
>g9749.t1 Gene=g9749 Length=399
MILNIQQVGYYRVDYDTALWQAIISQLNENHEEIHSINRAILQEEIALAWTEFNRVTVAH
ILEILNYFDKEFDSITWSKAYDNLNRLNERLFGTYAYDTFLEFVVRITENQINETGYNGF
DGEDPERTSLRSFIKPWNCWANYEKCSVQDHAEFLKYYIDGNQLAVFDYCNAIKLVNKTM
FDDILNNVLTNSVFANRILFLANLGCSPVAENLQNLLNSILNVLNTLTRPERAQIIANTY
TKSSIALEITLDFLDQNAAALYDIMGEFIEQLLMSMPSYINGQKNTAKYQSILTKFHGFG
LISNENLNKATDSVASNNAWITQNYKNILDYFGLEEITDPPTTTPNTTPIASTPSQTSTA
ASDEPTTLAPTTTTQGASSIMVSMFIMFFCVIISFIFTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9749.t1 | Gene3D | G3DSA:1.25.50.20 | - | 16 | 335 | 2.8E-41 |
| 5 | g9749.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 372 | - |
| 2 | g9749.t1 | PANTHER | PTHR11533:SF283 | AMINOPEPTIDASE | 2 | 326 | 1.2E-38 |
| 3 | g9749.t1 | PANTHER | PTHR11533 | PROTEASE M1 ZINC METALLOPROTEASE | 2 | 326 | 1.2E-38 |
| 1 | g9749.t1 | Pfam | PF11838 | ERAP1-like C-terminal domain | 2 | 295 | 3.0E-29 |
| 8 | g9749.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 375 | - |
| 9 | g9749.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 376 | 397 | - |
| 7 | g9749.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 398 | 399 | - |
| 4 | g9749.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 376 | 398 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed