General information for g9767.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Senecionine N-oxygenase.
Parent gene
- The parent gene g9767 is located on chr_1: 5100366..5101046 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9767 | g9767.t1 | isoform | g9767.t1 | 5100366 | 5101046 |
| chr_1 | g9767 | g9767.t1 | exon | g9767.t1.exon1 | 5100366 | 5101046 |
| chr_1 | g9767 | g9767.t1 | cds | g9767.t1.CDS1 | 5100366 | 5101046 |
| chr_1 | g9767 | g9767.t1 | TSS | g9767.t1 | NA | NA |
| chr_1 | g9767 | g9767.t1 | TTS | g9767.t1 | NA | NA |
Sequences
>g9767.t1 Gene=g9767 Length=681
ATGTTCGAAAATAAAAAAGTCTTACTCATGGGAAGTGGAGTAAGTGCTTTAGATATGGTC
ATTGAAATTGACAAAGTAGCTGAGAAAGTCATTTGGATAAATAATTTTAGACAAACTCAT
GGTGCACAAATAAAGCTAGAACTGTCTGATAAAACTATTGATAAATCATCTACTGTCAAA
AGGTTCACAAAAAGTGGAGCAGAATTTGAAGATGGAACTTTTGAAGAATTTGAAATTATT
GCTCTAGCTACAGGATATGATTTCACTTTTCCATTTTTATCAGTTGACTCTGGAATTTCA
GTTTATGACAAATTAGTTCAGCAACTTTATAAACAAATAATTAATGCAAATCGACCATCA
ATGGCTATCATTGGATTGCCTTTATTTTCAATAACAATGCCATTATTTGAGCTACAAATT
AAATTCTGTCTTCAATATTGGTCAGGTAGAAAGAATTTTCCTTCAAAGAATGAAATGTTG
AAAGTTATTCAAAAAGATATTAAAGTTCTAAAAATTGACGAGAATGTTCACAAAGCACAA
TGTTTGGGACTAGCGAGTGATGAAATTTATTACAATGATCTCGCACAGACAGCAGAAATT
AAGCCACTTAAGCCAGTTTTTATAAAAATGTGTAATTTTCAAGTGAAAAACTCATCGAAA
AAATTACAGAAATTTTCGTGA
>g9767.t1 Gene=g9767 Length=226
MFENKKVLLMGSGVSALDMVIEIDKVAEKVIWINNFRQTHGAQIKLELSDKTIDKSSTVK
RFTKSGAEFEDGTFEEFEIIALATGYDFTFPFLSVDSGISVYDKLVQQLYKQIINANRPS
MAIIGLPLFSITMPLFELQIKFCLQYWSGRKNFPSKNEMLKVIQKDIKVLKIDENVHKAQ
CLGLASDEIYYNDLAQTAEIKPLKPVFIKMCNFQVKNSSKKLQKFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9767.t1 | Gene3D | G3DSA:3.50.50.60 | - | 72 | 226 | 0e+00 |
| 2 | g9767.t1 | PANTHER | PTHR23023 | DIMETHYLANILINE MONOOXYGENASE | 2 | 205 | 0e+00 |
| 1 | g9767.t1 | Pfam | PF00743 | Flavin-binding monooxygenase-like | 56 | 204 | 0e+00 |
| 3 | g9767.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 2 | 83 | 2e-07 |
| 4 | g9767.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 59 | 204 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050661 | NADP binding | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0004499 | N,N-dimethylaniline monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed