General information for g9795.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Polypeptide N-acetylgalactosaminyltransferase 35A.
Parent gene
- The parent gene g9795 is located on chr_1: 5228279..5230259 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9795 | g9795.t1 | TTS | g9795.t1 | 5228216 | 5228216 |
| chr_1 | g9795 | g9795.t1 | isoform | g9795.t1 | 5228279 | 5230259 |
| chr_1 | g9795 | g9795.t1 | exon | g9795.t1.exon1 | 5228279 | 5228410 |
| chr_1 | g9795 | g9795.t1 | cds | g9795.t1.CDS1 | 5228279 | 5228410 |
| chr_1 | g9795 | g9795.t1 | exon | g9795.t1.exon2 | 5228469 | 5229762 |
| chr_1 | g9795 | g9795.t1 | cds | g9795.t1.CDS2 | 5228469 | 5229762 |
| chr_1 | g9795 | g9795.t1 | exon | g9795.t1.exon3 | 5229823 | 5230259 |
| chr_1 | g9795 | g9795.t1 | cds | g9795.t1.CDS3 | 5229823 | 5230259 |
| chr_1 | g9795 | g9795.t1 | TSS | g9795.t1 | 5230334 | 5230334 |
Sequences
>g9795.t1 Gene=g9795 Length=1863
ATGAATAAAAAAGTATTTTGCTGTGGATTTTTTTTCGGTGTTTTATTAACATGGATTTTA
TCATTTTATCTTTATTACACATTAAATAGTCCACAATCACTGAAATATAAAGATTTACAA
AAAAATATTTTTAATATTCACGAATTTGATGAAAATGAATTATCAAATAATATAATAAAT
GATGACAATAGTTTAAGTGGAAAAGCATCATATGTAAAAAAGAAATTTCGCAAAGAACAG
CTAAAAAGAAAGCAAAGTCAATTGTTAATTGATGAATTAACACCCGTTACAATTGCTCAA
ATTCCAGAATTTGGAATCATTAGAACTGCAGAAGATCAATTCATAAGAGATGAAGGATAT
AAAACTCATGCTTTCAATGTATTAGTCAGCAATCAAATTGGGAATCACAGAAATATTCCA
GATACGCGCAATAAAATATGTTCTTCACAGAAATATGATAATCAACTTCCAACTGCTTCA
ATTATAATGTGCTTTTATAATGAACATTTAGAAACTTTAATTCGTTCAATCAATTCAGTA
TTTGAGAGAACTCCCGAGCAAATCCTCAAAGAAATTATTCTCGTTGATGATGGAAGTAAT
ATAAGAGATCTCAAAGATGAATTAGAAACTAAAATTAAAGAATTAAAATTCCATGAAAAA
GTTAGAATTCTTAGAAATGCAAAACGTGAAGGATTAATTAGATCGCGAGTTTATGGATCT
CGAAATGCAACTGCTGAAGTCATTATTTTCCTTGATAGTCACATTGAAGTCAATGTTCAA
TGGATTGAGCCACTTTTGAATCTTATCAAACATAACAGAACTGTTATTGCTGTTCCAATA
ATTGACATAATCAATGCAGATACATTTGCATATTCATCTTCACCTCTTGTACGTGGTGGT
TTCAATTGGGGTCTTCATTTTCGTTGGGATATGATTCCAAAGTCATTATTAAAAACTGAA
AAAGATTTTGTTGGTCCTTTTTTGAGCGCAACAATGGCTGGTGGATTGTTTGCAATTGAT
AGAAAATATTTTAAAGAAATAGGTGAATATGATATGCAAATGGATGAATGGGGAGGAGAA
AATATTGAAATATCATTCAGACAATGGCAATGTGGTGGCAGTATACAAATTATTCCATGC
TCAAGAGTTGGTCATGTTTTTCGAAAGAGAAGACCTTATGGCTCAGTTGGTTCTGATGAT
ACAATGATTAAAAATTCATTACGTTTAGCTCATACTTGGATGGATGAATATGTAAAATAT
TTTTTAGAAAATCAACCAACAGCAAGAGGTAAAGAATATGGTGACATAAGTGAGAGACTT
GCATTACGTGAAAAACTTCAATGTAAATCATTCAAATGGTATTTAGAAAATGTTTATCCC
GAACAAGCATTGCCAGGTGAAAAGAGCAAACAAGAACTTCCACAATTTCAACCATGGCAG
AAAAGAAAAAGAAATTATATAAAAACTTACATGTTGAGATTAAGTAACACAACTCTCTGT
GCAACAATTGAAGGATTGGCAAAAGATAAAAATTCTTGGAGAAAAGGTAGCAGAGTTGAA
TTGGCACAATGTTTAAGAGTTAAAAGTCAAATGTGGTATGAAACTGAAAAAAGTGAACTT
GTATTTGGTCAATTACTTTGTTTAGAAGCTCAAGGATCATCATTATCACAACCACTATTA
AATAAATGTCATGAAATGGGCGGTGATCAACAATGGCATCATAGACAAGCGAAAGAATCT
CCAATTTATAATGTAGCGACGGGCACTTGTCTTTCAGCACTAAAAGCAGAAAAAGGTGCA
ATTTTGCAGCTAGCAATTTGTGAAAATTCTCCATTAGTTACATGGGATTTAGTGCAAATT
TAA
>g9795.t1 Gene=g9795 Length=620
MNKKVFCCGFFFGVLLTWILSFYLYYTLNSPQSLKYKDLQKNIFNIHEFDENELSNNIIN
DDNSLSGKASYVKKKFRKEQLKRKQSQLLIDELTPVTIAQIPEFGIIRTAEDQFIRDEGY
KTHAFNVLVSNQIGNHRNIPDTRNKICSSQKYDNQLPTASIIMCFYNEHLETLIRSINSV
FERTPEQILKEIILVDDGSNIRDLKDELETKIKELKFHEKVRILRNAKREGLIRSRVYGS
RNATAEVIIFLDSHIEVNVQWIEPLLNLIKHNRTVIAVPIIDIINADTFAYSSSPLVRGG
FNWGLHFRWDMIPKSLLKTEKDFVGPFLSATMAGGLFAIDRKYFKEIGEYDMQMDEWGGE
NIEISFRQWQCGGSIQIIPCSRVGHVFRKRRPYGSVGSDDTMIKNSLRLAHTWMDEYVKY
FLENQPTARGKEYGDISERLALREKLQCKSFKWYLENVYPEQALPGEKSKQELPQFQPWQ
KRKRNYIKTYMLRLSNTTLCATIEGLAKDKNSWRKGSRVELAQCLRVKSQMWYETEKSEL
VFGQLLCLEAQGSSLSQPLLNKCHEMGGDQQWHHRQAKESPIYNVATGTCLSALKAEKGA
ILQLAICENSPLVTWDLVQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9795.t1 | CDD | cd02510 | pp-GalNAc-T | 160 | 459 | 4.83286E-173 |
| 15 | g9795.t1 | CDD | cd00161 | RICIN | 494 | 617 | 6.18556E-11 |
| 9 | g9795.t1 | Coils | Coil | Coil | 201 | 221 | - |
| 8 | g9795.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 97 | 465 | 6.6E-153 |
| 7 | g9795.t1 | Gene3D | G3DSA:2.80.10.50 | - | 486 | 620 | 1.3E-14 |
| 3 | g9795.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 3 | 618 | 1.2E-231 |
| 4 | g9795.t1 | PANTHER | PTHR11675:SF63 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE | 3 | 618 | 1.2E-231 |
| 2 | g9795.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 160 | 344 | 8.9E-29 |
| 1 | g9795.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 491 | 609 | 4.4E-12 |
| 11 | g9795.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 12 | g9795.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 13 | g9795.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 16 | - |
| 14 | g9795.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 10 | g9795.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 620 | - |
| 19 | g9795.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 546 | 620 | 11.59 |
| 18 | g9795.t1 | SMART | SM00458 | ricin_3 | 488 | 618 | 6.4E-14 |
| 6 | g9795.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 136 | 461 | 1.03E-59 |
| 5 | g9795.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 485 | 617 | 6.96E-19 |
| 17 | g9795.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00710 (polypeptide N-acetylgalactosaminyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
