Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable mitochondrial pyruvate carrier 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9798 g9798.t1 isoform g9798.t1 5242346 5242919
chr_1 g9798 g9798.t1 exon g9798.t1.exon1 5242346 5242675
chr_1 g9798 g9798.t1 cds g9798.t1.CDS1 5242346 5242675
chr_1 g9798 g9798.t1 exon g9798.t1.exon2 5242735 5242743
chr_1 g9798 g9798.t1 cds g9798.t1.CDS2 5242735 5242743
chr_1 g9798 g9798.t1 exon g9798.t1.exon3 5242806 5242919
chr_1 g9798 g9798.t1 cds g9798.t1.CDS3 5242806 5242919
chr_1 g9798 g9798.t1 TSS g9798.t1 5242977 5242977
chr_1 g9798 g9798.t1 TTS g9798.t1 NA NA

Sequences

>g9798.t1 Gene=g9798 Length=453
ATGATTTTTTATTCTAGACTTTATAATTTTATCATTAAAACTACTGACAAAAGAGTTCCA
CATTTTGCAAGAAATTTTTGGGAATATGAAGCTGGTCCTAAAACAATTTTCTTTTGGGCA
CCAATGTGCAAGTGGGTAATGGTAATAGCAGGAATTTCAGATTTATCTCGACCAGCAGAA
TTGTTATCCATTGAACAAGCTACATCATTAGCAGCAACAGCTTACATTGCTTCTCGTTTT
TCAATGGTCATTACACCCAAAAATTATACACTTTTCTCTGTAAACATTTTTGTTGCAATT
ACACAAACTATTCAACTTTTTCGAGCACTCAATTACAAACATCAACAAGGAGAGTTGTTT
AACAATTTCAAGGAAAAGAAAAAAAGTAGAAAAAGTGTATATATCTTTTATTTCCAAAGT
CTTAAAAAAATTTTCACTTTTATTATGAATTAA

>g9798.t1 Gene=g9798 Length=150
MIFYSRLYNFIIKTTDKRVPHFARNFWEYEAGPKTIFFWAPMCKWVMVIAGISDLSRPAE
LLSIEQATSLAATAYIASRFSMVITPKNYTLFSVNIFVAITQTIQLFRALNYKHQQGELF
NNFKEKKKSRKSVYIFYFQSLKKIFTFIMN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9798.t1 PANTHER PTHR14154:SF2 MITOCHONDRIAL PYRUVATE CARRIER 2 23 115 3.9E-34
3 g9798.t1 PANTHER PTHR14154 UPF0041 BRAIN PROTEIN 44-RELATED 23 115 3.9E-34
1 g9798.t1 Pfam PF03650 Mitochondrial pyruvate carriers 24 127 2.3E-37
8 g9798.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 35 -
11 g9798.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 36 55 -
4 g9798.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 56 66 -
12 g9798.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 67 85 -
7 g9798.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 86 90 -
10 g9798.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 111 -
5 g9798.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 112 131 -
9 g9798.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 132 149 -
6 g9798.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 150 150 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006850 mitochondrial pyruvate transmembrane transport BP
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed