General information for g9831.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Chymotrypsin-2.
Parent gene
- The parent gene g9831 is located on chr_1: 5426194..5426898 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9831 | g9831.t18 | TTS | g9831.t18 | 5425831 | 5425831 |
| chr_1 | g9831 | g9831.t18 | isoform | g9831.t18 | 5425885 | 5426898 |
| chr_1 | g9831 | g9831.t18 | exon | g9831.t18.exon1 | 5425885 | 5425958 |
| chr_1 | g9831 | g9831.t18 | cds | g9831.t18.CDS1 | 5425885 | 5425958 |
| chr_1 | g9831 | g9831.t18 | exon | g9831.t18.exon2 | 5426071 | 5426126 |
| chr_1 | g9831 | g9831.t18 | cds | g9831.t18.CDS2 | 5426071 | 5426126 |
| chr_1 | g9831 | g9831.t18 | exon | g9831.t18.exon3 | 5426186 | 5426410 |
| chr_1 | g9831 | g9831.t18 | cds | g9831.t18.CDS3 | 5426186 | 5426410 |
| chr_1 | g9831 | g9831.t18 | exon | g9831.t18.exon4 | 5426479 | 5426898 |
| chr_1 | g9831 | g9831.t18 | cds | g9831.t18.CDS4 | 5426479 | 5426483 |
| chr_1 | g9831 | g9831.t18 | TSS | g9831.t18 | 5426920 | 5426920 |
Sequences
>g9831.t18 Gene=g9831 Length=775
ATGATTCGTCAAATTGTTACAATCTTGGCAGTTATTGCCGTTGCATTTGCCTCTCGTGAG
TTTAATTAAAAGAAAATTTCTAAGTGTTTAAAAAATAAAGAAAAAATTTTTTTCTATGAA
ATAGCAATTCCTGAGGATGAGTTGGATCGTGAGAGCCGTATTGTTGGTGGAACAAATGCG
AACATTGCCGATATTCCATGGCAAGTGTCATTGAGAACTACCGCTAACTTCCACTTCTGT
GGTGGTTCAATTATTTCAAATCGTTGGATTGTAACTGCTGCTCATTGCACAGTTGGTCGT
GCTGGAAACTCAATTAACGTCGTTGTTGGTACACACTTTCTTAACTCAGGCGGTATTGCT
CATCGATCAAACCGCATCATTAACCATCCAAGTTATAACGCCAACACAATTGCCAATGAT
TGCTCATATTGGTGGCGGACAGACAGTTGTTGTTTCTGGCTGGGGCGGTACAACCGTCAA
CGGCGGTGCTTCACCAAATCATCTTCAACGTTTGACTAAACAAACTTTAACAAATGCTGA
TTGCCGTGCTCGTCACTCTGCTGCTAATGCTGCTTTTGTCTTTGATCACAAGATTTGCAC
ATTCACACAAGCAGGACAAGGAATCTGCCAAGGTGATTCAGGCGGCCCATTGACACTTAA
CGGACAATTGATCGGTATCGTCTCATGGAATATCCCATGCGCTCGTGGTTTCCCAGACGC
TTACGATCGTATTTCCTCGCACAGATCTTGGATTCAACAGCAAACCGGAGTTTAA
>g9831.t18 Gene=g9831 Length=119
MIAHIGGGQTVVVSGWGGTTVNGGASPNHLQRLTKQTLTNADCRARHSAANAAFVFDHKI
CTFTQAGQGICQGDSGGPLTLNGQLIGIVSWNIPCARGFPDAYDRISSHRSWIQQQTGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9831.t18 | Gene3D | G3DSA:2.40.10.10 | - | 3 | 117 | 6.5E-29 |
| 2 | g9831.t18 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 8 | 117 | 5.3E-24 |
| 3 | g9831.t18 | PANTHER | PTHR24276:SF78 | AT20289P-RELATED | 8 | 117 | 5.3E-24 |
| 1 | g9831.t18 | Pfam | PF00089 | Trypsin | 8 | 113 | 3.5E-23 |
| 6 | g9831.t18 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 69 | 80 | - |
| 8 | g9831.t18 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 118 | 14.099 |
| 5 | g9831.t18 | SMART | SM00020 | trypsin_2 | 1 | 113 | 5.5E-4 |
| 4 | g9831.t18 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 7 | 118 | 3.11E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed