Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trypsin gamma.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9831 g9831.t24 TTS g9831.t24 5425831 5425831
chr_1 g9831 g9831.t24 isoform g9831.t24 5426194 5426898
chr_1 g9831 g9831.t24 exon g9831.t24.exon1 5426194 5426774
chr_1 g9831 g9831.t24 cds g9831.t24.CDS1 5426194 5426774
chr_1 g9831 g9831.t24 exon g9831.t24.exon2 5426844 5426898
chr_1 g9831 g9831.t24 cds g9831.t24.CDS2 5426844 5426898
chr_1 g9831 g9831.t24 TSS g9831.t24 5426920 5426920

Sequences

>g9831.t24 Gene=g9831 Length=636
ATGATTCGTCAAATTGTTACAATCTTGGCAGTTATTGCCGTTGCATTTGCCTCTCCAATT
CCTGAGGATGAGTTGGATCGTGAGAGCCGTATTGTTGGTGGAACAAATGCGAACATTGCC
GATATTCCATGGCAAGTGTCATTGAGAACTACCGCTAACTTCCACTTCTGTGGTGGTTCA
ATTATTTCAAATCGTTGGATTGTAACTGCTGCTCATTGCACAGTTGGTCGTGCTGGAAAC
TCAATTAACGTCGTTGTTGGTACACACTTTCTTAACTCAGGCGGTATTGCTCATCGATCA
AACCGCATCATTAACCATCCAAGTTATAACGCCAACACAATTGCCAATGATGTCTCAGTT
GTTGAAACTGCCACGACTATTGCTTTCACGACTACTGCTCGCTCAATTCCAATGAACAGT
GCTCATATTGGTGGCGGACAGACAGTTGTTGTTTCTGGCTGGGGCGGTACAACCGTCAAC
GGCGGTGCTTCACCAAATCATCTTCAACGTTTGACTAAACAAACTTTAACAAATGCTGAT
TGCCGTGCTCGTCACTCTGCTGCTAATGCTGCTTTTGTCTTTGATCACAAGATTTGCACA
TTCACACAAGCAGGACAAGGAATCTGCCAAGGTGAT

>g9831.t24 Gene=g9831 Length=212
MIRQIVTILAVIAVAFASPIPEDELDRESRIVGGTNANIADIPWQVSLRTTANFHFCGGS
IISNRWIVTAAHCTVGRAGNSINVVVGTHFLNSGGIAHRSNRIINHPSYNANTIANDVSV
VETATTIAFTTTARSIPMNSAHIGGGQTVVVSGWGGTTVNGGASPNHLQRLTKQTLTNAD
CRARHSAANAAFVFDHKICTFTQAGQGICQGD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g9831.t24 CDD cd00190 Tryp_SPc 31 212 3.44668E-51
9 g9831.t24 Gene3D G3DSA:2.40.10.10 - 31 212 1.7E-44
10 g9831.t24 Gene3D G3DSA:2.40.10.10 - 43 135 1.7E-44
2 g9831.t24 PANTHER PTHR24276 POLYSERASE-RELATED 1 212 2.7E-43
3 g9831.t24 PANTHER PTHR24276:SF78 AT20289P-RELATED 1 212 2.7E-43
6 g9831.t24 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 58 73 4.0E-8
5 g9831.t24 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 113 127 4.0E-8
4 g9831.t24 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 206 212 4.0E-8
1 g9831.t24 Pfam PF00089 Trypsin 31 212 2.1E-36
12 g9831.t24 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
13 g9831.t24 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
14 g9831.t24 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 12 -
15 g9831.t24 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
11 g9831.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 212 -
18 g9831.t24 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 68 73 -
19 g9831.t24 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 31 212 21.684
17 g9831.t24 SMART SM00020 trypsin_2 30 212 3.0E-32
7 g9831.t24 SUPERFAMILY SSF50494 Trypsin-like serine proteases 6 212 3.24E-50
8 g9831.t24 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed