Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9863 g9863.t8 TTS g9863.t8 5747185 5747185
chr_1 g9863 g9863.t8 isoform g9863.t8 5747313 5748594
chr_1 g9863 g9863.t8 exon g9863.t8.exon1 5747313 5747623
chr_1 g9863 g9863.t8 cds g9863.t8.CDS1 5747313 5747623
chr_1 g9863 g9863.t8 exon g9863.t8.exon2 5747693 5747860
chr_1 g9863 g9863.t8 cds g9863.t8.CDS2 5747693 5747860
chr_1 g9863 g9863.t8 exon g9863.t8.exon3 5748368 5748532
chr_1 g9863 g9863.t8 cds g9863.t8.CDS3 5748368 5748500
chr_1 g9863 g9863.t8 exon g9863.t8.exon4 5748593 5748594
chr_1 g9863 g9863.t8 TSS g9863.t8 5748641 5748641

Sequences

>g9863.t8 Gene=g9863 Length=646
TTATTTCAATAGGTTTTCAACAAAACGCGTCAAAATGCCTGAATACAAAATCTATTATTT
CAATGTAAAAGCACTTGCTGAACCATTGCGCTTTTTACTCTCTTATAAGAATATTCCATT
TGAAGATATTCGTATCGAAAAAAGCGACTGGCCTGCAATCAAACCAACCATGCCAATGAT
GCAGATGCCGGTTTTGGAAGTTGACGGCAAAAGAGCGCATCAGTCACTCGCTATGGCACG
CTATCTTGCTAAACAAGTAGGATTGGTTGGATCAAATGATTGGGAAGATTTGGAAATCGA
TACTGTAGTTGATACAATTAATGATTTCCGCTTAAAGATTGCGGTCGTTTCATATGAAGC
AGACGAAGAAGTACAAAAGAAGAAGCGTGTTACGCTTGACAATGAGACAATTCCATTTTA
TCTCGAAAAACTCGACAGCATTGTTGCTGCTAATAATGGTCATTTTGCATTGGGAAAATT
AACTTGGGCTGATTTGTATTTCACTGCAATTCTTGATTATTTGAATTATATGGCAAAAAC
TGATTTAATTGCTAATCATGAGAATTTGAAGAAAGTTGTTGCAACAGTTTTAGCTCTCGA
TGGAATCAAACAATGGGTTGAGAAGCGCCCACAAACTGATTTGTAA

>g9863.t8 Gene=g9863 Length=203
MPEYKIYYFNVKALAEPLRFLLSYKNIPFEDIRIEKSDWPAIKPTMPMMQMPVLEVDGKR
AHQSLAMARYLAKQVGLVGSNDWEDLEIDTVVDTINDFRLKIAVVSYEADEEVQKKKRVT
LDNETIPFYLEKLDSIVAANNGHFALGKLTWADLYFTAILDYLNYMAKTDLIANHENLKK
VVATVLALDGIKQWVEKRPQTDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9863.t8 CDD cd03039 GST_N_Sigma_like 4 73 0.000000
11 g9863.t8 CDD cd03192 GST_C_Sigma_like 83 185 0.000000
8 g9863.t8 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 197 0.000000
7 g9863.t8 Gene3D G3DSA:1.20.1050.10 - 76 187 0.000000
3 g9863.t8 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 2 203 0.000000
4 g9863.t8 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 2 203 0.000000
1 g9863.t8 Pfam PF02798 Glutathione S-transferase, N-terminal domain 7 72 0.000002
2 g9863.t8 Pfam PF14497 Glutathione S-transferase, C-terminal domain 96 198 0.000000
10 g9863.t8 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 27.445000
9 g9863.t8 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 81 203 19.172000
13 g9863.t8 SFLD SFLDG01205 AMPS.1 1 201 0.000000
14 g9863.t8 SFLD SFLDG00363 AMPS (cytGST): Alpha-, Mu-, Pi-, and Sigma-like 1 201 0.000000
5 g9863.t8 SUPERFAMILY SSF52833 Thioredoxin-like 2 76 0.000000
6 g9863.t8 SUPERFAMILY SSF47616 GST C-terminal domain-like 77 202 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values