General information for g988.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g988 is located on chr_3: 7269634..7271579 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g988 | g988.t6 | isoform | g988.t6 | 7267154 | 7269634 |
| chr_3 | g988 | g988.t6 | exon | g988.t6.exon1 | 7267154 | 7267999 |
| chr_3 | g988 | g988.t6 | cds | g988.t6.CDS1 | 7267435 | 7267797 |
| chr_3 | g988 | g988.t6 | exon | g988.t6.exon2 | 7268195 | 7269105 |
| chr_3 | g988 | g988.t6 | exon | g988.t6.exon3 | 7269174 | 7269634 |
| chr_3 | g988 | g988.t6 | TSS | g988.t6 | NA | NA |
| chr_3 | g988 | g988.t6 | TTS | g988.t6 | NA | NA |
Sequences
>g988.t6 Gene=g988 Length=2218
AATGTGAAAATTTATTGAAATCTGTGTAAATATTGTGCAAAATAATCAAAAATAAATGCA
AGGTAATTTTTTATTTTTGCTTAAAATTTTCTCTCTGCAAACCATCCATGAAGACATTTT
GGAACAGGTCCTGGTAAATTTTTGAATTCACATCTTCCAAGTTCTTGCATATTTTTAGCA
TCAAGTACAAGTAAACCAACATGATTTTCATCACCATTTCCCCAAACCATTGATGCCAAA
ATTACACCATCATCTTCAGTTTGAGGATCAGGCGAAGGAACAAATATTGGTTCACTTGGA
TAGACATTTGTCTCACACCATGTCAGCTTTGTTTTGTTCACAACATCAACTTTTATTAAC
GTTCCAGGATTAGATGCATCAACATCAGAACTAATTGCATAAAAATATTGATATTCAACA
CCCAAATGTTGCTCGTAATGAATCCTTGGTGTTTCCTAAAATTGCAAAGAAGTTCTGGTT
TGCAAAAAATTGATCCATCAGGTAATGAAAATGCTGTAGCTTCACTATCTTTGAGATTAA
CCAAATTTTCTCCAATAACTTTAAAACTTTCTTCATTTGTTTCATAATTCCATGCGAAAA
AGTTTGTCAATGATTTCAATTTTGTTGGGTATTTTAATGGCAAAACAAATCTCAATGGTC
GACCACGGAAAAGTTTGGCATAATCGGGATTATTTTGCATATTTTTCATGCTATCAATAT
ACATGCAATTTAGCATTTCTGGATCTTTATAGCAACTTATATCGAGTATAACATGATCAT
CTTTTTCATATTGATTAATAATATGCAAAAAGAAAAATGCTTCAGCTTGAAATGTGTGTC
GCAGTTGACCATTCTCACGATCAATTAAGTAAATGTTTGTCGATTTATCAGGAAACCATT
TAAGGCATGAAATCATAGGCTCATTCATCAATTGTGATTTAACAACTGCCGGTACAGAAA
CTGTCAAAGGTTGTTCAACGATTATGAAAAAATGCTCAGTAATTCCAAAAGTATGCATGT
AACTTGGATGAAGTTTCCAACGTGTTGGCAATTCTGCAACAACCCTTGCATTATCAAACA
TATTCTCACCATTTGGAAAACATAAAACACAATAAGCCGGTCCTGATTTTGTGACAGTTA
ATCCAACATTGTAAACTGTTCCATCACTCATAACATGTGGATGCGAAGTGTGATTGACTA
TTCCATATTTTTCATGTAAATTTAATTTTTCAAGTGTCTCAAGTGTTACTGAATCAATTT
TGTGAATTATTGGACTCTCAGCAAAACAAAAATATTCATCATTAAATGGATAAATTGATA
TCATTGCGTTATCTGAATTTGCGTCAGCTGGTTTAAAAAGTGATGCAACTCTTTGAAAAA
TACTCTGGCAAGGATCAGGACAGCTTGCAGTACCAAACTCAGTCACAACAACACGATTAG
CAGCTAAATTTTTTTTATAAGCGTCACTCTTCAAAAATCTGCACTGATAAGTAACATTTC
CATGAAAAATATCAAATCTATGAAGCAAAGCTGAACTATCAAAAAGATGATTGAAAGTCA
TTGAACCAACTTTTATGCTTCCTGGTCCATTTCTTAACAAACTTCCATTAATCCATTTTG
GAATTTGTCCACTGACTTCTCCACGAATTGGTTCAATAATTTCATGCTCGCATGATCTCA
ACCAAACATTCACATCACAATTTGGATATAAATTTTCTTTCAATTTTGTTTTAGGATTAA
AACTAAAATTTCCTTCATCTTCATCTTCATCCAAATCAACAATTTCAATTTCATCATCTT
CATCGTTGATAATCTTTGTAACGATAAATTTAGAATTATTTTCATCACTTGGTTTCGATA
ATTTAATTGATCGAGGTCGACTAAAAGAACTTATGCCGCTTTCAGTTGACATTCTTCTCT
CATTAATGCTCAATTGAATGTGAGAAAATTCATCAGAAATTGTATGATCAAAGCATACGT
CAGAAATCAAACTTTTACGTCGATAGGAATCTTTTGGAACTGTTTGAACTCTCTTGAAAC
TTTTTGATGGTGTTGAAACACCGCTTGAGATTTCACTTAAAGGAGATGCATCACCAGATT
TTGGCACAAATGAACCACTAACACTCAATAAATCCAAAGTTTGAAGCACTTTTGTTGGCG
TATGTGCTGGTGATTTATCAAAGTAACTTGAATAAGGCACATGAAGTGCCTCTGACAT
>g988.t6 Gene=g988 Length=120
MLPGPFLNKLPLIHFGICPLTSPRIGSIISCSHDLNQTFTSQFGYKFSFNFVLGLKLKFP
SSSSSSKSTISISSSSSLIIFVTINLELFSSLGFDNLIDRGRLKELMPLSVDILLSLMLN
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
