General information for g988.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g988 is located on chr_3: 7269634..7271579 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g988 | g988.t7 | isoform | g988.t7 | 7267154 | 7269634 |
| chr_3 | g988 | g988.t7 | exon | g988.t7.exon1 | 7267154 | 7267999 |
| chr_3 | g988 | g988.t7 | cds | g988.t7.CDS1 | 7267435 | 7267797 |
| chr_3 | g988 | g988.t7 | exon | g988.t7.exon2 | 7268195 | 7269115 |
| chr_3 | g988 | g988.t7 | exon | g988.t7.exon3 | 7269180 | 7269634 |
| chr_3 | g988 | g988.t7 | TSS | g988.t7 | NA | NA |
| chr_3 | g988 | g988.t7 | TTS | g988.t7 | NA | NA |
Sequences
>g988.t7 Gene=g988 Length=2222
AATGTGAAAATTTATTGAAATCTGTGTAAATATTGTGCAAAATAATCAAAAATAAATGCA
AGGTAATTTTTTATTTTTGCTTAAAATTTTCTCTCTGCAAACCATCCATGAAGACATTTT
GGAACAGGTCCTGGTAAATTTTTGAATTCACATCTTCCAAGTTCTTGCATATTTTTAGCA
TCAAGTACAAGTAAACCAACATGATTTTCATCACCATTTCCCCAAACCATTGATGCCAAA
ATTACACCATCATCTTCAGTTTGAGGATCAGGCGAAGGAACAAATATTGGTTCACTTGGA
TAGACATTTGTCTCACACCATGTCAGCTTTGTTTTGTTCACAACATCAACTTTTATTAAC
GTTCCAGGATTAGATGCATCAACATCAGAACTAATTGCATAAAAATATTGATATTCAACA
CCCAAATGTTGCTCGTAATGAATCCTTGGTGTTTCACATCCTAAATTGCAAAGAAGTTCT
GGTTTGCAAAAAATTGATCCATCAGGTAATGAAAATGCTGTAGCTTCACTATCTTTGAGA
TTAACCAAATTTTCTCCAATAACTTTAAAACTTTCTTCATTTGTTTCATAATTCCATGCG
AAAAAGTTTGTCAATGATTTCAATTTTGTTGGGTATTTTAATGGCAAAACAAATCTCAAT
GGTCGACCACGGAAAAGTTTGGCATAATCGGGATTATTTTGCATATTTTTCATGCTATCA
ATATACATGCAATTTAGCATTTCTGGATCTTTATAGCAACTTATATCGAGTATAACATGA
TCATCTTTTTCATATTGATTAATAATATGCAAAAAGAAAAATGCTTCAGCTTGAAATGTG
TGTCGCAGTTGACCATTCTCACGATCAATTAAGTAAATGTTTGTCGATTTATCAGGAAAC
CATTTAAGGCATGAAATCATAGGCTCATTCATCAATTGTGATTTAACAACTGCCGGTACA
GAAACTGTCAAAGGTTGTTCAACGATTATGAAAAAATGCTCAGTAATTCCAAAAGTATGC
ATGTAACTTGGATGAAGTTTCCAACGTGTTGGCAATTCTGCAACAACCCTTGCATTATCA
AACATATTCTCACCATTTGGAAAACATAAAACACAATAAGCCGGTCCTGATTTTGTGACA
GTTAATCCAACATTGTAAACTGTTCCATCACTCATAACATGTGGATGCGAAGTGTGATTG
ACTATTCCATATTTTTCATGTAAATTTAATTTTTCAAGTGTCTCAAGTGTTACTGAATCA
ATTTTGTGAATTATTGGACTCTCAGCAAAACAAAAATATTCATCATTAAATGGATAAATT
GATATCATTGCGTTATCTGAATTTGCGTCAGCTGGTTTAAAAAGTGATGCAACTCTTTGA
AAAATACTCTGGCAAGGATCAGGACAGCTTGCAGTACCAAACTCAGTCACAACAACACGA
TTAGCAGCTAAATTTTTTTTATAAGCGTCACTCTTCAAAAATCTGCACTGATAAGTAACA
TTTCCATGAAAAATATCAAATCTATGAAGCAAAGCTGAACTATCAAAAAGATGATTGAAA
GTCATTGAACCAACTTTTATGCTTCCTGGTCCATTTCTTAACAAACTTCCATTAATCCAT
TTTGGAATTTGTCCACTGACTTCTCCACGAATTGGTTCAATAATTTCATGCTCGCATGAT
CTCAACCAAACATTCACATCACAATTTGGATATAAATTTTCTTTCAATTTTGTTTTAGGA
TTAAAACTAAAATTTCCTTCATCTTCATCTTCATCCAAATCAACAATTTCAATTTCATCA
TCTTCATCGTTGATAATCTTTGTAACGATAAATTTAGAATTATTTTCATCACTTGGTTTC
GATAATTTAATTGATCGAGGTCGACTAAAAGAACTTATGCCGCTTTCAGTTGACATTCTT
CTCTCATTAATGCTCAATTGAATGTGAGAAAATTCATCAGAAATTGTATGATCAAAGCAT
ACGTCAGAAATCAAACTTTTACGTCGATAGGAATCTTTTGGAACTGTTTGAACTCTCTTG
AAACTTTTTGATGGTGTTGAAACACCGCTTGAGATTTCACTTAAAGGAGATGCATCACCA
GATTTTGGCACAAATGAACCACTAACACTCAATAAATCCAAAGTTTGAAGCACTTTTGTT
GGCGTATGTGCTGGTGATTTATCAAAGTAACTTGAATAAGGCACATGAAGTGCCTCTGAC
AT
>g988.t7 Gene=g988 Length=120
MLPGPFLNKLPLIHFGICPLTSPRIGSIISCSHDLNQTFTSQFGYKFSFNFVLGLKLKFP
SSSSSSKSTISISSSSSLIIFVTINLELFSSLGFDNLIDRGRLKELMPLSVDILLSLMLN
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
