Gene loci information

Transcript annotation

  • This transcript has been annotated as Mitochondrial enolase superfamily member 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9890 g9890.t1 TTS g9890.t1 5897453 5897453
chr_1 g9890 g9890.t1 isoform g9890.t1 5897549 5898916
chr_1 g9890 g9890.t1 exon g9890.t1.exon1 5897549 5897826
chr_1 g9890 g9890.t1 cds g9890.t1.CDS1 5897549 5897826
chr_1 g9890 g9890.t1 exon g9890.t1.exon2 5898198 5898834
chr_1 g9890 g9890.t1 cds g9890.t1.CDS2 5898198 5898834
chr_1 g9890 g9890.t1 exon g9890.t1.exon3 5898905 5898916
chr_1 g9890 g9890.t1 cds g9890.t1.CDS3 5898905 5898916
chr_1 g9890 g9890.t1 TSS g9890.t1 NA NA

Sequences

>g9890.t1 Gene=g9890 Length=927
ATGATGAGAAAATTCTTAGTATCACTCATTGATTTTCGCTATTGCACTGATGTATTGACT
AAGCAAGAAGCTATTGATTTATTGAAAAAATCATCTTTTGGTAAAGAGGAGCGTGAAAAA
GATTTATTGAAAAATGGATATCGCAGTTATACAACAGCTGTTGGTTGGTTAAATTATAAT
GATGAGAAAATGATTGCTTTATGCGATAAATATTTAGCAAAGAATTTTAATGCATTTAAA
ATTAAAATTGGTCAAGATTTAAAACGTGATATAGAACGTTGTCGTATGATGAGAAAACGT
ATTGGTGAAGATAAAGTTTTGATGGTTGATAGTAATCAAATTTTCGATGTTCAAGAAGCA
ATCGATTGGATTACTGCTTTAAAAGATTTTAATATTTTATGGTTTGAAGAACCAACGTCA
CCAGATGATGTGCTTGGACATAAAAAAATTGCTGAAGCAATAAAAGAATTTGGCATTGGT
GTTGCAAGTGGTGAAATGATTTGTAATCGTGTGATTTTTAAACAATTCATGCAAGTGGGA
GCATTTAAATTTTGTCAAGTTGATTCAGCAAGAATTGGTGGAGTAAGCGAATTATTGATA
GTTTATCTCATGGCAAAGAAAATGAATGTTAACGTCACTCCACATGCAGGTGGAGTCGGT
TTGTCTGAGATGATTCAACATTTGCAATTTTGGGATTATATTTGTGTATCAGGCACAAAA
GAAGGAAGATATATTGAGTATGTTGATCAGTCTCATGATTACTTTGTTGACGGTGTTGTA
GTTGAAAATGCACATTATCAAGCAAAGATGGTACCAGGTTTTAACACACAATTCACTGAT
GAATGTATTGAAAATTATGCATATCCGCATGGTAAAAAATGGCAAGAGTTATTTGATGCA
AATATTTTTCCAAGACCTGCTAAATAA

>g9890.t1 Gene=g9890 Length=308
MMRKFLVSLIDFRYCTDVLTKQEAIDLLKKSSFGKEEREKDLLKNGYRSYTTAVGWLNYN
DEKMIALCDKYLAKNFNAFKIKIGQDLKRDIERCRMMRKRIGEDKVLMVDSNQIFDVQEA
IDWITALKDFNILWFEEPTSPDDVLGHKKIAEAIKEFGIGVASGEMICNRVIFKQFMQVG
AFKFCQVDSARIGGVSELLIVYLMAKKMNVNVTPHAGGVGLSEMIQHLQFWDYICVSGTK
EGRYIEYVDQSHDYFVDGVVVENAHYQAKMVPGFNTQFTDECIENYAYPHGKKWQELFDA
NIFPRPAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9890.t1 Gene3D G3DSA:3.20.20.120 Enolase superfamily 1 300 2.1E-97
2 g9890.t1 PANTHER PTHR13794 ENOLASE SUPERFAMILY, MANDELATE RACEMASE 48 297 3.6E-80
1 g9890.t1 Pfam PF13378 Enolase C-terminal domain-like 66 278 1.4E-48
7 g9890.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 15 -
8 g9890.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
9 g9890.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 10 -
10 g9890.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 11 15 -
6 g9890.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 16 308 -
11 g9890.t1 SFLD SFLDS00001 Enolase 48 289 1.5E-41
4 g9890.t1 SMART SM00922 MR_MLE_2 61 155 6.8E-19
3 g9890.t1 SUPERFAMILY SSF51604 Enolase C-terminal domain-like 50 293 1.97E-57

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values