General information for g9929.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphatidylinositol 4-kinase type 2-beta.
Parent gene
- The parent gene g9929 is located on chr_1: 6065568..6067134 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9929 | g9929.t3 | TSS | g9929.t3 | 6063791 | 6063791 |
| chr_1 | g9929 | g9929.t3 | isoform | g9929.t3 | 6063886 | 6065008 |
| chr_1 | g9929 | g9929.t3 | exon | g9929.t3.exon1 | 6063886 | 6064039 |
| chr_1 | g9929 | g9929.t3 | cds | g9929.t3.CDS1 | 6063886 | 6064039 |
| chr_1 | g9929 | g9929.t3 | exon | g9929.t3.exon2 | 6064200 | 6064240 |
| chr_1 | g9929 | g9929.t3 | cds | g9929.t3.CDS2 | 6064200 | 6064240 |
| chr_1 | g9929 | g9929.t3 | exon | g9929.t3.exon3 | 6064306 | 6064383 |
| chr_1 | g9929 | g9929.t3 | cds | g9929.t3.CDS3 | 6064306 | 6064383 |
| chr_1 | g9929 | g9929.t3 | exon | g9929.t3.exon4 | 6064605 | 6065008 |
| chr_1 | g9929 | g9929.t3 | cds | g9929.t3.CDS4 | 6064605 | 6065006 |
| chr_1 | g9929 | g9929.t3 | TTS | g9929.t3 | NA | NA |
Sequences
>g9929.t3 Gene=g9929 Length=677
ATGGAAAAATTGATAGAAGACTTAAATTTATCAACATTAGATGATGGTGCGGATTTGTTT
AAAATATCTTTATCACCAGAACATTGTAGAATCCCTTTAACTCAACCAATCGATGAAATG
TATTCAGCTAGTGAAAATTTGAATAATAATTTAGATGATCCACATTTTAGTGACCTCGTT
TATCAAGCTGAAATAGCTATAGATGCTGGCATCTATCCAGAAAGAATATATCAAGGAAGT
AGCGGTTCTTATTTCGTAAAAAATCCTGCAAATAAAGTGATAGCTGTATTTAAACCCAAA
GATGAAGAGCCGTACGGTCGATTAAATCCAAAATGGACAAAACTATTTCACAAACTCTGT
TGTCCCTGTTGTTTTGGAAGAGCTTGCTTGATACCGAATCAGGGATATTTGAGTGAGGCT
GGAGCGAGTTTAGTTGATATTAAATTAAACTTGCAGATAGTTCCAAAGACAAGAGTTGTA
AGACTAGTCTCCGAAACTTTCAATTATCCTCGAATTGATCGTCAAAAGGCAAGAATAAAA
AGGACGATCAAAGAAAGAATGCCTGCAGCACGATTCAAAAGAATGACTTTACCACCAAAA
ACAGGATCTTTTCAGCTTTTCGTAGATGGATATAAAGATGCAGATCACTGGTTAAGACGT
TTTGAACAAGAACCACT
>g9929.t3 Gene=g9929 Length=225
MEKLIEDLNLSTLDDGADLFKISLSPEHCRIPLTQPIDEMYSASENLNNNLDDPHFSDLV
YQAEIAIDAGIYPERIYQGSSGSYFVKNPANKVIAVFKPKDEEPYGRLNPKWTKLFHKLC
CPCCFGRACLIPNQGYLSEAGASLVDIKLNLQIVPKTRVVRLVSETFNYPRIDRQKARIK
RTIKERMPAARFKRMTLPPKTGSFQLFVDGYKDADHWLRRFEQEP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9929.t3 | PANTHER | PTHR12865 | PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II | 41 | 225 | 0 |
| 3 | g9929.t3 | PANTHER | PTHR12865:SF6 | PHOSPHATIDYLINOSITOL 4-KINASE TYPE 2-BETA | 41 | 225 | 0 |
| 1 | g9929.t3 | Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 79 | 221 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004430 | 1-phosphatidylinositol 4-kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
