General information for g9929.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphatidylinositol 4-kinase type 2-beta.
Parent gene
- The parent gene g9929 is located on chr_1: 6065568..6067134 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9929 | g9929.t6 | TSS | g9929.t6 | 6063791 | 6063791 |
| chr_1 | g9929 | g9929.t6 | isoform | g9929.t6 | 6064387 | 6066487 |
| chr_1 | g9929 | g9929.t6 | exon | g9929.t6.exon1 | 6064387 | 6065365 |
| chr_1 | g9929 | g9929.t6 | cds | g9929.t6.CDS1 | 6064890 | 6065365 |
| chr_1 | g9929 | g9929.t6 | exon | g9929.t6.exon2 | 6065427 | 6065871 |
| chr_1 | g9929 | g9929.t6 | cds | g9929.t6.CDS2 | 6065427 | 6065706 |
| chr_1 | g9929 | g9929.t6 | exon | g9929.t6.exon3 | 6066182 | 6066487 |
| chr_1 | g9929 | g9929.t6 | TTS | g9929.t6 | NA | NA |
Sequences
>g9929.t6 Gene=g9929 Length=1730
AGTAACTCATAAAAATTTATTTTTCATCGCTCATTGGACATAAATATCGTGCACAAGATT
CGCGTTGATATTCAGCAAAAATGAGCATACATTATAATGATTATCGAGGCATTGTCTTAA
TTTAAATCTTCTAGATGATGTTGGTTAAATCAAACAGTCACACACATGTTAACTCGAAAA
TTTTCTCTAATATAATGTTTTTCACTGTGATTTTTTAGAAAGTGATAGCTGTATTTAAAC
CCAAAGATGAAGAGCCGTACGGTCGATTAAATCCAAAATGGACAAAACTATTTCACAAAC
TCTGTTGTCCCTGTTGTTTTGGAAGAGCTTGCTTGATACCGAATCAGGGATATTTGAGTG
AGGCTGGAGCGAGTTTAGTTGATATTAAATTAAACTTGCAGATAGTTCCAAAGACAAGAG
TTGTAAGACTAGTCTCCGAAACTTTCAATTATCCTCGAATTGATCGTCAAAAGGCAAGAA
TAAAAAGGACGATCAAAGAAAGAATGCCTGCAGCACGATTCAAAAGAATGACTTTACCAC
CAAAAACAGGATCTTTTCAGCTTTTCGTAGATGGATATAAAGATGCAGATCACTGGTTAA
GACGTTTTGAACAAGAACCACTCTCACCGAAAGTTGCTCAAAAATTTCAATATCAATTTG
AAAGACTCGTTGTTTTAGATTATATCATACGCAACACAGATCGAGGTAATGATAATTGGC
TAATAAAATATGATCAACCATCAGTAAATCATTCGAAAAATGGAAGTATGAATGGAAGTG
CAAATTCTATTAATAATAATTTTATCACACTCACTACACCAACTAATAACATTCCCAATG
GATTAAGTCATAGTAACAGTTCTGGATCGTTTCATAAAGATGATGATAGTTGGAATGTTG
TAGATCTACCCGAAATTAGAATAGCCGCTATCGATAATGGTTTAGCTTTTCCATTTAAGC
ATCCAGACTCTTGGAGAGCTTATCCTTACCATTGGGCGTGGTTACCACAGGCTAAGGTTC
CTTTTAGTCAAGAGATCAAAGATTTAGTTCTTCCTCTATTGTCCGATTTAAATTTTGTTG
AAGAATTGTGCAATGATCTATTAGAATTGTTTAGGCAAGATAAAGGTTTTGATAGAGGTT
TATTTGAAAAACAAATGTCAGTGATGCGTGGTCAAATTCTAAATTTAACTCAAGCACTAA
AAGATGGAAAGAGCCCAGTACAACTCGTTCAAATGCCTGCAGTGATTGTTGAAAGGTAAA
AAAATTCTTCTCAACATTTTTAACTTTTTTCTTTAAATCCTTTTGTATTTCTCTTAAATA
GATCAAAAATAAATCAAGAAGCATCACGATTCGGATCTTTTAAACAGCGATTTCAAAATA
AAAGTCCTTTCTTCAGCTGGTGCTGATTTGAAAATAATGATAAACCTAAACTTATGAAAA
TATATCATACATTCCATTTGATTCGAGCTTATTTGCTGGATAAAAGTTTTCCCTTTTCGT
TATCCTGATAAATTTTTTTATTTCGTTCTGTTTTAAACTACCAAACCTTTGCTGCTAGTC
GCTTTAAACTTTGTGCATGTGGTTTATTTATTGCAGTTTTTACAATTTTTTTTGTTTTTG
ATAATTTATCTTGCTCTCTTTTTCTTTTTATCATCAAATGGCATCAAAATGTACTTTTTT
TCTTTTTTGATCATTATTTATGATAATAAAAAGTCTATTTATTGAAATTA
>g9929.t6 Gene=g9929 Length=251
MPAARFKRMTLPPKTGSFQLFVDGYKDADHWLRRFEQEPLSPKVAQKFQYQFERLVVLDY
IIRNTDRGNDNWLIKYDQPSVNHSKNGSMNGSANSINNNFITLTTPTNNIPNGLSHSNSS
GSFHKDDDSWNVVDLPEIRIAAIDNGLAFPFKHPDSWRAYPYHWAWLPQAKVPFSQEIKD
LVLPLLSDLNFVEELCNDLLELFRQDKGFDRGLFEKQMSVMRGQILNLTQALKDGKSPVQ
LVQMPAVIVER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9929.t6 | PANTHER | PTHR12865 | PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II | 4 | 251 | 0 |
| 1 | g9929.t6 | Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 6 | 227 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004430 | 1-phosphatidylinositol 4-kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
