Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g9948 | g9948.t9 | isoform | g9948.t9 | 6138816 | 6140365 |
chr_1 | g9948 | g9948.t9 | exon | g9948.t9.exon1 | 6138816 | 6139041 |
chr_1 | g9948 | g9948.t9 | cds | g9948.t9.CDS1 | 6138822 | 6139041 |
chr_1 | g9948 | g9948.t9 | exon | g9948.t9.exon2 | 6139590 | 6140365 |
chr_1 | g9948 | g9948.t9 | cds | g9948.t9.CDS2 | 6139590 | 6139675 |
chr_1 | g9948 | g9948.t9 | TSS | g9948.t9 | NA | NA |
chr_1 | g9948 | g9948.t9 | TTS | g9948.t9 | NA | NA |
>g9948.t9 Gene=g9948 Length=1002
AAAAAAATGTTTCCGCTTAATTTAGGAATTCTTATCGGAGGAATTCTAACGACAGGTGCA
ATGGGTGATCGTCTACAAGTGCCTAATGTGATTCTTCAGGGTTTCGCTACCGGAACTCTA
TTATATGTGATTTTCTTTGAAGTTCTCTCCAAAGATCGTTCGGGAATGCTTCCTTATTTG
AGTGTATTTGCCGGATTTGTCATTATGACTGGCCTACAATATATCGCTGGTGTAACTGAA
AATCAAGGATTGACGGTTTTAATCCCAGACGATGTATTAACAACACTTGATCAAAATCAT
GCACATGGGTAATTTTTTTATAAATCGAAAAATAGACATTGAGATAAACAGTAACGTGCA
CGATATCATAAAGGATCTTCAATTATCTGCACGTTTCACCACTTAACAACAAAGTTTATC
ATTTTGTCGATTTTCTCCTATAGGAGATAATTACGTGTTCCCCTCATGCTGATATCAAAC
CTTTAAGTGAAGTTTAAAATGAAAGTGCCAATTTCAACATTTAAGTACGTTATTATTATA
GAAACTCCTTTTTTCTTCCTTCAATTAAGTGATAAGATTTAAAGTCATTGTAAAAAGAAA
AGCACATGTTATTTTATCATCATCAAAATTTTTGTACATTAATCAGGGACTTGAGTTAAA
ATAACTTTATAAAGTAGATGAGAACTTATAAAATCCACTAGGCGAAAAACATGAATGAAT
CATATTTATTTGTGTATTTTGAAATATATGATGGTTGTGATCGCTATTATGAATGTGTGT
AGTTCATAAACATTTTCAATATTTCCTTATAGATTAAGTAGAGTGTACATAAATAGTAAA
ATATTTTAGTAAATGTAAATTTTTTAGCTAATAAATCAAGACTTTATTATTTAAAAACTT
GAATTTATCATAAAAAATTTTTTTAAATTCTTTCACCTCGGTTTATAGATAACTTTTTAT
TACAGCTCTAATTGAGTACCATATCATTCAGTTTATGATAAT
>g9948.t9 Gene=g9948 Length=101
MFPLNLGILIGGILTTGAMGDRLQVPNVILQGFATGTLLYVIFFEVLSKDRSGMLPYLSV
FAGFVIMTGLQYIAGVTENQGLTVLIPDDVLTTLDQNHAHG
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
7 | g9948.t9 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
8 | g9948.t9 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
9 | g9948.t9 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
12 | g9948.t9 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
5 | g9948.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 29 | - |
10 | g9948.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 47 | - |
4 | g9948.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 48 | 53 | - |
11 | g9948.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 54 | 74 | - |
6 | g9948.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 75 | 101 | - |
3 | g9948.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 19 | - |
2 | g9948.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 29 | 48 | - |
1 | g9948.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 55 | 77 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
There are no GO annotations for this transcript.
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.