General information for g998.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein diaphanous.
Parent gene
- The parent gene g998 is located on chr_3: 7386977..7389589 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g998 | g998.t3 | isoform | g998.t3 | 7386415 | 7389589 |
| chr_3 | g998 | g998.t3 | exon | g998.t3.exon1 | 7386415 | 7386417 |
| chr_3 | g998 | g998.t3 | cds | g998.t3.CDS1 | 7386416 | 7386417 |
| chr_3 | g998 | g998.t3 | exon | g998.t3.exon2 | 7388266 | 7389589 |
| chr_3 | g998 | g998.t3 | cds | g998.t3.CDS2 | 7388266 | 7388575 |
| chr_3 | g998 | g998.t3 | TSS | g998.t3 | NA | NA |
| chr_3 | g998 | g998.t3 | TTS | g998.t3 | NA | NA |
Sequences
>g998.t3 Gene=g998 Length=1327
TCAGTTGTTTGTTGATATATTCAACTTTAATTACAATTTAATATATTTTTAATTACAAAT
TTTATTGTACTTTTATTTAAAAATTAATTTTCTAAAATAATTTCAAGAAAATGCAGAAAT
CAACTTTTTGCGGGCGTTGACAACTTTAATGAAAATATTTCTGTCATAAAACTGGTATAA
AGTAAAATAGTAGAAAAGCGAAAACACAAATTTTTGTTTGCTTCATAAATTTAATTGTTT
TACTCATTTAAACTACTTAATTAGAACTAGAATACCTTTTAAATGCTTATTAAATGTTTA
AAATACGCGAAGTAGTTCGAGTTTAATAATTTAATTCAGTGTAAATGCCAGAAATAAGAG
AAAACAAGAAAGTAGCAACAAGTGGCAGTTAAGAGAAAGAAATTTTCCACTAAAATTCGC
TCAATTTTCATATAAGCAAGAAGAAGAGAAAGAAAAGTGCCTTTCAAACGAAAATTCAAA
AGTTATTTAAGTAAATATTCATTCGTTTCGCGAGCGGGTCGCCATGTAAAGCATTTTATT
TATCCATCGGAACTTTTTTGCACAAAGAGAGCGAATAAAAAAAGAAGAAATTTTGCCTTA
AATCATCACCATCGACGAACGAAAAGCAATGATCTAATCTTCCAGCGACATTAGTGTATA
GAAAAAACACACACTGATATAAGTGTAAACGCTAAAAAATATTTAAAAGGTGCTCAATTA
AATATTGAAATATAGCAGACGCAAAAGTTAAAAATGTCAATGAAACAATTCTCTTGTTAA
AAAGAAAGAGTGATGAGGCTTTATAAGTGAATCAATGAAAAAATATGAAATATTTTATTA
GTGTATTATCTTGATAAAAAATTTTATGCCTCGTAATTTAGATATATCGTGACGAAGATC
ACAAAAAAATCAAACAAACAGCAAGAGAAATAAAATCAAAGAAATATATAAAAGAATTAT
TTCCATAGATAAGTTTTTAAAAAAGTTGAAATTAAAACAAAATAGATCGTGAAAATGTCT
CGTCACGATAGAACAAAATCAACTGGGGGAGGCGGATTTTTAGATACGCTTTTTACGCGA
TCAACAAAGCGCGGGAATCGTTATCACAATGGTGGCACTCATCAAAGACCAGTTTCAGCT
AATGAAAATGATTATTTTGATGCACAAGAATTAGAAAATATGGTTCTGAGACTTACTGTC
GAGGAAGTTAATCAGCGTTTTCATGAAATTCTTGAAGATATGAATATACCAAAAGACAAA
CGTGATCCATTGATGAAGAAAAATTTAGATGAGAAACGAGATATGTTAAAGATGCACTTA
AAAGGCA
>g998.t3 Gene=g998 Length=104
MSRHDRTKSTGGGGFLDTLFTRSTKRGNRYHNGGTHQRPVSANENDYFDAQELENMVLRL
TVEEVNQRFHEILEDMNIPKDKRDPLMKKNLDEKRDMLKMHLKG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g998.t3 | Gene3D | G3DSA:1.10.20.40 | - | 51 | 104 | 6.1E-9 |
| 2 | g998.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - |
| 3 | g998.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 42 | - |
| 1 | g998.t3 | Pfam | PF06371 | Diaphanous GTPase-binding Domain | 61 | 103 | 4.0E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0003779 | actin binding | MF |
| GO:0030036 | actin cytoskeleton organization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
