Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein diaphanous.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g998 g998.t4 isoform g998.t4 7386977 7388575
chr_3 g998 g998.t4 exon g998.t4.exon1 7386977 7388575
chr_3 g998 g998.t4 cds g998.t4.CDS1 7388171 7388575
chr_3 g998 g998.t4 TSS g998.t4 7389415 7389415
chr_3 g998 g998.t4 TTS g998.t4 NA NA

Sequences

>g998.t4 Gene=g998 Length=1599
ATGTCTCGTCACGATAGAACAAAATCAACTGGGGGAGGCGGATTTTTAGATACGCTTTTT
ACGCGATCAACAAAGCGCGGGAATCGTTATCACAATGGTGGCACTCATCAAAGACCAGTT
TCAGCTAATGAAAATGATTATTTTGATGCACAAGAATTAGAAAATATGGTTCTGAGACTT
ACTGTCGAGGAAGTTAATCAGCGTTTTCATGAAATTCTTGAAGATATGAATATACCAAAA
GACAAACGTGATCCATTGATGAAGAAAAATTTAGATGAGAAACGAGATATGTTAAAGATG
CACTTAAAAGGTAAGTTTGATGCATTTATTTATATAAACAACGGTCTTACATTGTATTCA
TATTTCACGCATGTTTGGCGTCTGATTGTCTTTCTTCATATTTAAATAAATTCCTCTTTT
TCTATACACCCCATCCGTCCTTGACTTACTTTTTCAATCTCGTATTATTATTGTTACGAT
TATTTTATGCTCAGCTGATTTCTCAATTAAAGAAAATAGGAGAAAAGCATTTTTTAAATT
TGTAAATTATTGAAATCATTCATAGTCATGATGAGATCAAATCATGTAACAACATTTTTT
CTCGCTCTTTGGCATACATACTTTTAAAACATGAATTTTTAAAAACCGAAAAAAGAGCAA
TAATAACAGTTCACACTTGATGGGAATAAAACAGAACCTTGATTGTTAAACGCGCGCGAA
AAAAGAAGTTACACATAAACAATGGTAAGAAAAGAGTACTCGCTCACTGTCATTGCTATT
GCTGATGACCCTTGCATGAAGAACATTGAAGTGAAATTGTAGTTGCGTTTTATAACTTCC
GCTTTATGTATCTGAATGATTTTTTCTTTTAATTTGAATATACTCACGTTATGGACTTTT
TACTTTTTCTTTTATAAGGTACGAATGAAAGATAAAGGGTGCATATTTAATTTCATATAT
CAAGACATTGTAAATTATAAAATAAAATTGAAAAATACTTAAGAGATGTATTCAATTGAC
TTTATTGATCTTGCATAGTCATTATTTTTCATCTTATTAACCTCGGAATTTTATTCATTC
CAAAGTCATTTTGGTGCTAATTTTAAATCTCTATGAATAAATTCATTTTTCTTTCTTCTC
GGCAATGACGACAAACCGTGGTGTATCAATTTAATAAAGTAACACAATTCACTCACTTGC
TAATAGTAAAAACAAATTGTAAATCGATTGATTTCTTATCGTACAAATGACATTCTAGAT
CGAACATATTTGTGGTTACGAAAGGAGAGAAATATGAGAGAATGAAATTCTCACTATACA
TTTTTTTTGCAGTTGAATGACGTCATGTTTTCTTCCTCACCCATATTGTACGATTTCTAC
TTGACTCAACTTATGTGCGATTTATTATAATATTCTTTTTATATAAGTATAAACATTGTA
TGAGAATGATTTTGCGGGTGGTTGATAGATAAGTTACAGTGTTTTATAAATTAGTTCAAA
ATGCTAATTACGCATAAATTGTTTTTATTCAGAATTCAGAAATTAAATCGTTCAAGGTTA
CTCGATTCAGTAATAGACGGGCACCTTGTCTTGAATAAA

>g998.t4 Gene=g998 Length=134
MSRHDRTKSTGGGGFLDTLFTRSTKRGNRYHNGGTHQRPVSANENDYFDAQELENMVLRL
TVEEVNQRFHEILEDMNIPKDKRDPLMKKNLDEKRDMLKMHLKGKFDAFIYINNGLTLYS
YFTHVWRLIVFLHI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g998.t4 Gene3D G3DSA:1.10.20.40 - 51 104 1.1E-8
1 g998.t4 Pfam PF06371 Diaphanous GTPase-binding Domain 61 109 3.7E-9
3 g998.t4 SUPERFAMILY SSF48371 ARM repeat 65 112 2.47E-5
2 g998.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 109 131 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031267 small GTPase binding MF
GO:0003779 actin binding MF
GO:0030036 actin cytoskeleton organization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed