Gene loci information

Isoforms of this gene

  • There are 9 isoforms that are expressed from this gene.
  • The longest transcript is g10429.t1
  • List of isoforms

g10429.t1, g10429.t3, g10429.t4, g10429.t5, g10429.t6, g10429.t7, g10429.t8, g10429.t9, g10429.t10

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 2 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length
ko04010
ko04014
ko04015
ko04024
ko04062
ko04510
ko04611
ko04670
ko04720
ko04722
ko04934
ko04972
ko05211
ko05417
ko04010
ko04014
ko04015
ko04024
ko04062
ko04510
ko04530
ko04611
ko04670
ko04720
ko04722
ko04934
ko04972
ko05211
ko05417

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g10429.t1) is OG0000603. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012063111.1, XP_012057734.1
Apis mellifera AMELL 2 GB54447-PA, GB44237-PA
Culicoides sonorensis CSONO 2 CSON000323-1, CSON003650-1
Polypedilum nubifer PNUBI 1 Pn.13711
Polypedilum vanderplanki PVAND 3 g3526.t1, g3525.t1, g10429.t1
Polypedilum pembai PPEMB 3 g12043.t1, g7059.t1, g7060.t1
Belgica antarctica BANTA 3 IU25_02999-mRNA-1, IU25_12575-mRNA-1, IU25_09327-mRNA-1
Clunio marinus CMARI 4 CRK99368.1, CRK87842.1, CRK87840.1, CRK87843.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL019455-PA, AAEL009377-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS40578.1, EDS41736.1, EDS31015.1
Culex quinquefasciatus CQUIN 3 CPIJ014919-PA, CPIJ014407-PA, CPIJ008396-PA
Anopheles atroparvus AATRO 2 AATE009159-PA, AATE004613-PA
Anopheles sinensis china ASINEC 2 ASIC008308-PA, ASIC011308-PA
Anopheles dirus ADIRU 2 ADIR009164-PA, ADIR002680-PA
Anopheles farauti AFARA 2 AFAF011583-PA, AFAF001091-PA
Anopheles epiroticus AEPIR 2 AEPI005298-PA, AEPI003187-PA
Anopheles christyi ACHRI 1 ACHR010159-PA
Anopheles merus AMERU 2 AMEM013264-PA, AMEM002479-PA
Anopheles melas AMELA 2 AMEC002523-PA, AMEC016555-PA
Anopheles arabiensis AARAB 1 AARA007052-PA
Anopheles coluzzii ACOLU 1 ACOM023714-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON001874-PA, ACON004769-PA
Anopheles gambiae AGAMB 2 AGAP001874-PA, AGAP004769-PA
Anopheles quadriannulatus AQUAD 1 AQUA007229-PA
Anopheles minimus AMINI 2 AMIN008110-PA, AMIN000445-PA
Anopheles culicifacies ACULI 2 ACUA028191-PA, ACUA020124-PA
Anopheles funestus AFUNE 1 AFUN000011-PA
Anopheles stephensi indian ASTEPI 2 ASTEI08107-PA, ASTEI08745-PA
Anopheles stephensi ASTEP 2 ASTE003591-PA, ASTE009850-PA
Anopheles albimanus AALBI 2 AALB008840-PA, AALB007563-PA
Anopheles darlingi ADARL 2 ADAC009981-PA, ADAC008888-PA
Drosophila willistoni DWILL 2 FBpp0375188, FBpp0374825
Drosophila pseudoobscura DPSEU 2 FBpp0277870, FBpp0339276
Drosophila persimilis DPERS 2 FBpp0188927, FBpp0175767
Drosophila ananassae DANAN 2 FBpp0114557, FBpp0347215
Drosophila melanogaster DMELA 2 FBpp0072086, FBpp0072746
Drosophila sechellia DSECH 2 FBpp0195638, FBpp0199776
Drosophila simulans DSIMU 2 FBpp0325552, FBpp0210233
Drosophila erecta DEREC 2 FBpp0141478, FBpp0133099
Drosophila yakuba DYAKU 2 FBpp0259379, FBpp0265917
Drosophila virilis DVIRI 2 FBpp0234863, FBpp0392730
Drosophila mojavensis DMOJA 2 FBpp0165908, FBpp0169915
Drosophila grimshawi DGRIM 2 FBpp0148945, FBpp0154082
Lucilia cuprina LCUPR 4 KNC33765, KNC24644, KNC32123, KNC29222
Musca domestica MDOME 2 MDOA009893-PA, MDOA011410-PA
Stomoxys calcitrans SCALC 2 SCAU010401-PA, SCAU009001-PA
Glossina brevipalpis GBREV 2 GBRI006763-PA, GBRI002429-PA
Glossina palpalis GPALP 1 GPPI023483-PA
Glossina austeni GAUST 2 GAUT027513-PA, GAUT031261-PA
Glossina pallidipes GPALL 2 GPAI025916-PA, GPAI046792-PA
Glossina morsitans GMORS 1 GMOY009236-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g10429.t1) is OG0005372. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN2340_c0_g1_i5.p1
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN2480_c0_g2_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c73_g1_i3.p1, TRINITY_DN101_c0_g5_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN19814_c0_g1_i1.p1, TRINITY_DN9011_c0_g1_i1.p1, TRINITY_DN4860_c0_g1_i1.p1, TRINITY_DN73704_c0_g1_i1.p1, TRINITY_DN111527_c0_g1_i1.p1
Clunio marinus CMARI CRK99368.1
Cardiocladius sp CARDI TRINITY_DN26580_c0_g1_i1.p1
Belgica antarctica BANTA IU25_02999-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN41780_c1_g1_i1.p1, TRINITY_DN245578_c0_g1_i1.p2, TRINITY_DN5796_c0_g1_i5.p1
Chironomus riparius CRIPA g9191.t1
Chironomus columbiensis CCOLU TRINITY_DN51181_c0_g1_i1.p1, TRINITY_DN4009_c1_g1_i1.p1, TRINITY_DN2323_c0_g3_i1.p1
Chironomus tentans CTENT g8095.t1
Chironomus dilutus CDILU TRINITY_DN705_c2_g1_i1.p1
Polypedilum nubifer PNUBI Pn.13711
Polypedilum vanderplanki PVAND g10429.t1
Polypedilum pembai PPEMB g12043.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL009377-PA
Anopheles gambiae AGAMB AGAP001874-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation