Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g11238.t1
  • List of isoforms

g11238.t1, g11238.t3, g11238.t4, g11238.t5

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04142
ko04144
ko04721
ko04961
ko05016
ko05100

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11238.t1) is OG0005090. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012055128.1
Apis mellifera AMELL 1 GB50357-PA
Culicoides sonorensis CSONO 1 CSON012012-1
Polypedilum nubifer PNUBI 1 Pn.07769
Polypedilum vanderplanki PVAND 1 g11238.t1
Polypedilum pembai PPEMB 1 g718.t1
Belgica antarctica BANTA 1 IU25_08136-mRNA-1
Clunio marinus CMARI 1 CRK98210.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL022819-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS40945.1
Culex quinquefasciatus CQUIN 1 CPIJ014882-PA
Anopheles atroparvus AATRO 1 AATE010011-PA
Anopheles sinensis china ASINEC 1 ASIC008017-PA
Anopheles dirus ADIRU 1 ADIR003104-PA
Anopheles farauti AFARA 1 AFAF018618-PA
Anopheles epiroticus AEPIR 1 AEPI003852-PA
Anopheles christyi ACHRI 1 ACHR001784-PA
Anopheles merus AMERU 1 AMEM003483-PA
Anopheles melas AMELA 1 AMEC001993-PA
Anopheles arabiensis AARAB 1 AARA004848-PA
Anopheles coluzzii ACOLU 1 ACOM037282-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON003021-PA
Anopheles gambiae AGAMB 1 AGAP003021-PA
Anopheles quadriannulatus AQUAD 1 AQUA000142-PA
Anopheles minimus AMINI 1 AMIN003728-PA
Anopheles culicifacies ACULI 1 ACUA023367-PA
Anopheles funestus AFUNE 1 AFUN007886-PA
Anopheles stephensi indian ASTEPI 1 ASTEI03300-PA
Anopheles stephensi ASTEP 1 ASTE008064-PA
Anopheles albimanus AALBI 1 AALB002404-PA
Anopheles darlingi ADARL 1 ADAC005509-PA
Drosophila willistoni DWILL 1 FBpp0254421
Drosophila pseudoobscura DPSEU 1 FBpp0273836
Drosophila persimilis DPERS 1 FBpp0176029
Drosophila ananassae DANAN 1 FBpp0114383
Drosophila melanogaster DMELA 1 FBpp0073966
Drosophila sechellia DSECH 1 FBpp0203999
Drosophila simulans DSIMU 1 FBpp0319708
Drosophila erecta DEREC 1 FBpp0137915
Drosophila yakuba DYAKU 1 FBpp0261026
Drosophila virilis DVIRI 1 FBpp0394378
Drosophila mojavensis DMOJA 1 FBpp0386167
Drosophila grimshawi DGRIM 1 FBpp0409710
Lucilia cuprina LCUPR 1 KNC23594
Musca domestica MDOME 1 MDOA009195-PA
Stomoxys calcitrans SCALC 1 SCAU016155-PB
Glossina brevipalpis GBREV 1 GBRI003463-PA
Glossina palpalis GPALP 1 GPPI031264-PA
Glossina austeni GAUST 1 GAUT046451-PA
Glossina pallidipes GPALL 2 GPAI031948-PA, GPAI027553-PA
Glossina morsitans GMORS 1 GMOY010079-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11238.t1) is OG0007727. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN1191_c0_g1_i2.p1
Parochlus steinenii PSTEI PSG03525
Trissopelopia nemorum TNEMO TRINITY_DN97_c0_g6_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1262_c0_g1_i5.p1
Telmatogeton pecinata TPECI TRINITY_DN1029_c0_g2_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN12808_c0_g1_i1.p1
Clunio marinus CMARI CRK98210.1
Cardiocladius sp CARDI TRINITY_DN570_c0_g2_i16.p1, TRINITY_DN570_c0_g3_i2.p1
Belgica antarctica BANTA IU25_08136-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN2189_c0_g1_i11.p1, TRINITY_DN20648_c0_g1_i6.p1
Chironomus riparius CRIPA g12559.t1
Chironomus columbiensis CCOLU TRINITY_DN2289_c0_g1_i14.p1
Chironomus tentans CTENT g3601.t1
Chironomus dilutus CDILU TRINITY_DN1235_c0_g2_i8.p1
Polypedilum nubifer PNUBI Pn.07769
Polypedilum vanderplanki PVAND g11238.t1
Polypedilum pembai PPEMB g718.t1
Culicoides sonorensis CSONO CSON012012-1
Aedes aegypti lvpagwg AAEGYL AAEL022819-PB
Anopheles gambiae AGAMB AGAP003021-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation