Gene loci information

Transcript annotation

  • This transcript has been annotated as Tyrosine-protein kinase Src64B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11447 g11447.t4 isoform g11447.t4 16312665 16313887
chr_1 g11447 g11447.t4 exon g11447.t4.exon1 16312665 16313122
chr_1 g11447 g11447.t4 cds g11447.t4.CDS1 16312883 16313122
chr_1 g11447 g11447.t4 exon g11447.t4.exon2 16313181 16313243
chr_1 g11447 g11447.t4 cds g11447.t4.CDS2 16313181 16313243
chr_1 g11447 g11447.t4 exon g11447.t4.exon3 16313306 16313370
chr_1 g11447 g11447.t4 cds g11447.t4.CDS3 16313306 16313370
chr_1 g11447 g11447.t4 exon g11447.t4.exon4 16313428 16313496
chr_1 g11447 g11447.t4 cds g11447.t4.CDS4 16313428 16313496
chr_1 g11447 g11447.t4 exon g11447.t4.exon5 16313563 16313709
chr_1 g11447 g11447.t4 cds g11447.t4.CDS5 16313563 16313709
chr_1 g11447 g11447.t4 exon g11447.t4.exon6 16313767 16313887
chr_1 g11447 g11447.t4 cds g11447.t4.CDS6 16313767 16313887
chr_1 g11447 g11447.t4 TSS g11447.t4 NA NA
chr_1 g11447 g11447.t4 TTS g11447.t4 NA NA

Sequences

>g11447.t4 Gene=g11447 Length=923
AAAATGCACTTGGTCTGTGTCATGTATTAAGTAGACCTTGTCGAAAACAAACACCAACCA
TTTTCGATCTAGCACCAACATTGAGAGATGAATGGGAAATAAATCGAAATGAAATTCAAT
TGATAAGAAAACTTGGTCGTGGAAATTTTGGTGAAGTTTATTATGGAAAATGGCGAAACA
ATATTGAAGTGGCTGTTAAAACATTAAGAGAAGGAACAATGTCAACACAAGCTTTTCTTC
AAGAAGCTGCCATAATGAAAAAATTCCGCCATAATAGACTAGTCGCACTATATGCTGTAT
GTTCGAAAGAAGAACCAATATACATTGTTCAAGAATATATGGGCAAAGGAAGTTTACTTG
ATTTCCTCCGTGAAGGTGATGGACGATACCTTCAATTTGAAGACTTAATTTATATAGCAT
CACAAATAGCATCTGGAATGGAATATTTAGAAACAAAGCAATTGATTCATCGAGATTTAG
CTGCCCGCAATGTTCTTATCGGAGAAAATAATGTAGCAAAGATATGCGATTTTGGTTTAG
CAAGAGTTATCGCTGATGACGAATATTGTCCAAAGCAGGGTTCAAGGTTCCCAGTCAAAT
GGACAGCGCCTGAAGCAATCGTGTATGGAAAATTCTCAATAAAATCTGACGTATGGTCTT
ATGGTATACTTTTGATGGAACTTTTCACTTATGGTCAAGTTCCATATCCGGGTATGCATA
GTAGAGAAGTAATTGAACAAATTGAAAGAGGTTACAGAATGCCAAAACCAACAAATCATC
ATTTACCTGATACCATCTATAGTCTCATGCTCAATTGTTGGGATGCTGTGCCTGACAAGC
GACCGACCTTCGAGTTCTTGAATCATTATTTCGAAAGCTTTAGTGTAACATCTGAGGTTC
CTTATAAGGAGGTGCATGATTAA

>g11447.t4 Gene=g11447 Length=234
MSTQAFLQEAAIMKKFRHNRLVALYAVCSKEEPIYIVQEYMGKGSLLDFLREGDGRYLQF
EDLIYIASQIASGMEYLETKQLIHRDLAARNVLIGENNVAKICDFGLARVIADDEYCPKQ
GSRFPVKWTAPEAIVYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIEQIERGYR
MPKPTNHHLPDTIYSLMLNCWDAVPDKRPTFEFLNHYFESFSVTSEVPYKEVHD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g11447.t4 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1 223 9.2E-76
2 g11447.t4 PANTHER PTHR24418 TYROSINE-PROTEIN KINASE 1 231 3.9E-95
3 g11447.t4 PANTHER PTHR24418:SF419 TYROSINE-PROTEIN KINASE FRK 1 231 3.9E-95
11 g11447.t4 PIRSF PIRSF000654 ILK 1 226 6.4E-39
8 g11447.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 38 51 3.0E-37
6 g11447.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 76 94 3.0E-37
4 g11447.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 124 134 3.0E-37
7 g11447.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 143 165 3.0E-37
5 g11447.t4 PRINTS PR00109 Tyrosine kinase catalytic domain signature 189 211 3.0E-37
1 g11447.t4 Pfam PF07714 Protein tyrosine and serine/threonine kinase 3 216 5.2E-85
12 g11447.t4 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 82 94 -
14 g11447.t4 ProSiteProfiles PS50011 Protein kinase domain profile. 1 219 36.767
13 g11447.t4 SMART SM00219 tyrkin_6 3 218 2.7E-104
9 g11447.t4 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 4 223 5.19E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004713 protein tyrosine kinase activity MF
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values