Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g11447.t1
  • List of isoforms

g11447.t1, g11447.t3, g11447.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko01521
ko01522
ko04012
ko04013
ko04015
ko04062
ko04137
ko04144
ko04360
ko04370
ko04510
ko04520
ko04530
ko04540
ko04611
ko04613
ko04625
ko04727
ko04750
ko04810
ko04912
ko04915
ko04917
ko04919
ko04921
ko04926
ko05100
ko05120
ko05130
ko05131
ko05135
ko05152
ko05161
ko05163
ko05167
ko05168
ko05203
ko05205
ko05207
ko05208
ko05219
ko05417
ko05418

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11447.t1) is OG0000096. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012061237.1, XP_012057080.1, XP_012054572.1, XP_012056202.1
Apis mellifera AMELL 5 GB54910-PA, GB47566-PA, GB41082-PA, GB46371-PA, GB47556-PA
Culicoides sonorensis CSONO 8 CSON004367-1, CSON009856-1, CSON014854-3, CSON007913-1, CSON006578-2, CSON000346-1, CSON010201-1, CSON010237-1
Polypedilum nubifer PNUBI 5 Pn.16418, Pn.06274, Pn.02703, Pn.10918, Pn.02704
Polypedilum vanderplanki PVAND 5 g8881.t1, g7709.t1, g11448.t2, g6519.t1, g11447.t1
Polypedilum pembai PPEMB 7 g11373.t1, g9766.t1, g14152.t1, g6773.t1, g13915.t1, g11374.t1, g14153.t1
Belgica antarctica BANTA 7 IU25_00718-mRNA-1, IU25_09922-mRNA-1, IU25_00717-mRNA-1, IU25_02030-mRNA-1, IU25_00350-mRNA-1, IU25_11755-mRNA-1, IU25_00716-mRNA-1
Clunio marinus CMARI 5 CRL01691.1, CRL06727.1, CRL01444.1, CRL08754.1, CRL01434.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL004592-PA, AAEL008777-PC, AAEL024570-PA, AAEL019480-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 7 EDS44049.1, EDS44047.1, EDS30139.1, EDS33831.1, EDS44046.1, EDS41023.1, EDS35385.1
Culex quinquefasciatus CQUIN 7 CPIJ000836-PA, CPIJ007458-PA, CPIJ010659-PA, CPIJ000834-PA, CPIJ003985-PA, CPIJ009602-PA, CPIJ000833-PA
Anopheles atroparvus AATRO 6 AATE004835-PA, AATE005625-PA, AATE012026-PA, AATE006626-PA, AATE016180-PA, AATE017767-PA
Anopheles sinensis china ASINEC 6 ASIC018746-PA, ASIC016546-PA, ASIC015751-PA, ASIC019903-PA, ASIC018745-PA, ASIC002721-PA
Anopheles dirus ADIRU 5 ADIR011074-PA, ADIR007609-PA, ADIR015675-PA, ADIR011075-PA, ADIR001620-PA
Anopheles farauti AFARA 5 AFAF010939-PA, AFAF016979-PA, AFAF012011-PA, AFAF019560-PA, AFAF012584-PA
Anopheles epiroticus AEPIR 5 AEPI010687-PA, AEPI004066-PA, AEPI004067-PA, AEPI004068-PA, AEPI007262-PA
Anopheles christyi ACHRI 4 ACHR003603-PA, ACHR010171-PA, ACHR000542-PA, ACHR009256-PA
Anopheles merus AMERU 5 AMEM016281-PA, AMEM004298-PA, AMEM012803-PA, AMEM016884-PA, AMEM007442-PA
Anopheles melas AMELA 8 AMEC009292-PA, AMEC014671-PA, AMEC019683-PA, AMEC008972-PA, AMEC004704-PA, AMEC017861-PA, AMEC012887-PA, AMEC010316-PA
Anopheles arabiensis AARAB 5 AARA008391-PA, AARA016766-PA, AARA018185-PA, AARA016837-PA, AARA011250-PB
Anopheles coluzzii ACOLU 5 ACOM030162-PA, ACOM024450-PA, ACOM030166-PA, ACOM030165-PA, ACOM039948-PA
Anopheles coluzzii ngousso ACOLUN 4 ACON006510-PA, ACON008317-PD, ACON006270-PA, ACON004989-PA
Anopheles gambiae AGAMB 4 AGAP008317-PD, AGAP004989-PA, AGAP006270-PA, AGAP006510-PA
Anopheles quadriannulatus AQUAD 3 AQUA006189-PA, AQUA010638-PA, AQUA010010-PA
Anopheles minimus AMINI 5 AMIN011471-PA, AMIN008053-PA, AMIN005986-PA, AMIN005985-PA, AMIN007862-PA
Anopheles culicifacies ACULI 7 ACUA026960-PA, ACUA015408-PA, ACUA016237-PA, ACUA007502-PA, ACUA007130-PA, ACUA027938-PA, ACUA026317-PA
Anopheles funestus AFUNE 3 AFUN008761-PA, AFUN020224-PB, AFUN020352-PA
Anopheles stephensi indian ASTEPI 4 ASTEI02970-PA, ASTEI08910-PA, ASTEI10797-PA, ASTEI04541-PA
Anopheles stephensi ASTEP 6 ASTE008644-PA, ASTE001966-PA, ASTE008643-PA, ASTE008642-PA, ASTE000604-PA, ASTE008548-PA
Anopheles albimanus AALBI 6 AALB007301-PA, AALB003264-PA, AALB000281-PA, AALB005615-PA, AALB000282-PA, AALB000280-PA
Anopheles darlingi ADARL 5 ADAC000537-PA, ADAC007380-PA, ADAC010197-PA, ADAC008874-PA, ADAC003474-PA
Drosophila willistoni DWILL 4 FBpp0376959, FBpp0376503, FBpp0246748, FBpp0376931
Drosophila pseudoobscura DPSEU 5 FBpp0335319, FBpp0280509, FBpp0336116, FBpp0286347, FBpp0331011
Drosophila persimilis DPERS 6 FBpp0176828, FBpp0176827, FBpp0176826, FBpp0183493, FBpp0182048, FBpp0180803
Drosophila ananassae DANAN 4 FBpp0118460, FBpp0349846, FBpp0127916, FBpp0349621
Drosophila melanogaster DMELA 4 FBpp0307255, FBpp0310444, FBpp0303166, FBpp0079236
Drosophila sechellia DSECH 5 FBpp0205856, FBpp0194577, FBpp0198007, FBpp0195440, FBpp0208180
Drosophila simulans DSIMU 3 FBpp0328189, FBpp0211647, FBpp0316663
Drosophila erecta DEREC 4 FBpp0369298, FBpp0370564, FBpp0142005, FBpp0132718
Drosophila yakuba DYAKU 4 FBpp0256084, FBpp0265610, FBpp0359159, FBpp0355213
Drosophila virilis DVIRI 4 FBpp0226870, FBpp0399017, FBpp0392161, FBpp0400694
Drosophila mojavensis DMOJA 4 FBpp0163461, FBpp0385406, FBpp0161799, FBpp0387053
Drosophila grimshawi DGRIM 5 FBpp0420159, FBpp0146856, FBpp0409852, FBpp0408598, FBpp0149706
Lucilia cuprina LCUPR 2 KNC30365, KNC22458
Musca domestica MDOME 5 MDOA000917-PE, MDOA006871-PA, MDOA005993-PC, MDOA015996-PA, MDOA013032-PE
Stomoxys calcitrans SCALC 5 SCAU014880-PA, SCAU013441-PA, SCAU009900-PC, SCAU011107-PA, SCAU000740-PD
Glossina brevipalpis GBREV 5 GBRI034845-PA, GBRI042583-PA, GBRI034835-PA, GBRI040105-PA, GBRI034852-PA
Glossina palpalis GPALP 6 GPPI033654-PA, GPPI013481-PA, GPPI033678-PA, GPPI001923-PA, GPPI035081-PA, GPPI033674-PA
Glossina austeni GAUST 7 GAUT041654-PA, GAUT041644-PA, GAUT019107-PA, GAUT012822-PA, GAUT004884-PA, GAUT041642-PA, GAUT007327-PA
Glossina pallidipes GPALL 6 GPAI043327-PA, GPAI023473-PA, GPAI044311-PA, GPAI043307-PA, GPAI043328-PA, GPAI027298-PA
Glossina morsitans GMORS 6 GMOY011024-PA, GMOY007115-PA, GMOY011023-PA, GMOY011025-PA, GMOY003984-PA, GMOY004919-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11447.t1) is OG0000214. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN51291_c0_g1_i1.p2, TRINITY_DN35669_c1_g1_i1.p1, TRINITY_DN11442_c0_g1_i1.p3, TRINITY_DN1827_c0_g1_i1.p1, TRINITY_DN836_c0_g1_i23.p1, TRINITY_DN17727_c0_g1_i1.p2
Parochlus steinenii PSTEI PSG06638, PSG07198, PSG06634
Trissopelopia nemorum TNEMO TRINITY_DN12072_c0_g2_i1.p1, TRINITY_DN11792_c0_g1_i2.p1, TRINITY_DN7516_c0_g2_i1.p1, TRINITY_DN2946_c0_g2_i1.p1, TRINITY_DN5830_c0_g3_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN24686_c0_g1_i1.p3, TRINITY_DN603_c0_g3_i2.p1, TRINITY_DN2042_c0_g5_i1.p1, TRINITY_DN5223_c0_g1_i1.p4
Telmatogeton pecinata TPECI TRINITY_DN771_c0_g1_i1.p1, TRINITY_DN0_c8468_g1_i2.p1, TRINITY_DN186_c0_g2_i4.p1, TRINITY_DN0_c726_g5_i1.p1, TRINITY_DN2530_c0_g1_i14.p1
Cricotopus draysoni CDRAY TRINITY_DN83710_c0_g1_i1.p1, TRINITY_DN66066_c0_g1_i1.p1, TRINITY_DN19009_c0_g1_i1.p1, TRINITY_DN93878_c0_g1_i1.p1, TRINITY_DN57815_c0_g1_i1.p2, TRINITY_DN1012_c0_g1_i1.p1, TRINITY_DN20193_c0_g1_i2.p1, TRINITY_DN85204_c0_g1_i1.p1, TRINITY_DN12145_c0_g1_i1.p1
Clunio marinus CMARI CRL01691.1, CRL01444.1, CRL08754.1, CRL01434.1
Cardiocladius sp CARDI TRINITY_DN1978_c0_g1_i3.p1, TRINITY_DN594_c0_g2_i5.p1, TRINITY_DN2267_c0_g1_i5.p1, TRINITY_DN594_c0_g1_i23.p1, TRINITY_DN57995_c0_g1_i1.p2
Belgica antarctica BANTA IU25_00718-mRNA-1, IU25_00717-mRNA-1, IU25_02030-mRNA-1, IU25_00716-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN279880_c0_g1_i1.p1, TRINITY_DN92090_c0_g2_i1.p1, TRINITY_DN24698_c5_g1_i1.p1, TRINITY_DN19996_c0_g1_i2.p1, TRINITY_DN92090_c0_g1_i2.p4, TRINITY_DN245640_c0_g1_i1.p1, TRINITY_DN92090_c1_g1_i1.p1, TRINITY_DN24698_c3_g1_i1.p1, TRINITY_DN71562_c0_g2_i1.p1, TRINITY_DN52404_c0_g1_i1.p1, TRINITY_DN24698_c6_g1_i1.p2, TRINITY_DN274517_c0_g1_i1.p1, TRINITY_DN24698_c1_g2_i1.p1, TRINITY_DN239155_c0_g1_i1.p1, TRINITY_DN42250_c0_g1_i18.p1, TRINITY_DN88579_c0_g1_i1.p1, TRINITY_DN91274_c0_g1_i1.p1, TRINITY_DN23895_c0_g1_i7.p1
Chironomus riparius CRIPA g10441.t1, g2624.t1, g15218.t1, g9777.t1, g13196.t1
Chironomus columbiensis CCOLU TRINITY_DN21531_c0_g3_i1.p1, TRINITY_DN25703_c0_g1_i1.p1, TRINITY_DN74616_c0_g1_i1.p1, TRINITY_DN2914_c0_g1_i6.p1, TRINITY_DN70318_c0_g1_i1.p1, TRINITY_DN20008_c0_g1_i1.p1, TRINITY_DN16242_c0_g1_i1.p1, TRINITY_DN21531_c0_g2_i1.p1, TRINITY_DN25769_c0_g1_i1.p1, TRINITY_DN21531_c0_g1_i1.p1, TRINITY_DN3507_c0_g1_i10.p1
Chironomus tentans CTENT g9065.t1, g5084.t1, g2403.t1
Chironomus dilutus CDILU TRINITY_DN4387_c0_g1_i1.p1, TRINITY_DN4749_c0_g2_i5.p1, TRINITY_DN3808_c0_g1_i9.p1
Polypedilum nubifer PNUBI Pn.06274, Pn.02703, Pn.10918, Pn.02704
Polypedilum vanderplanki PVAND g8881.t1, g11448.t2, g6519.t1, g11447.t1
Polypedilum pembai PPEMB g11373.t1, g14152.t1, g13915.t1, g11374.t1, g14153.t1
Culicoides sonorensis CSONO CSON009856-1, CSON014854-3, CSON010237-1, CSON006578-2
Aedes aegypti lvpagwg AAEGYL AAEL004592-PA, AAEL024570-PA, AAEL019480-PA
Anopheles gambiae AGAMB AGAP008317-PD, AGAP006270-PA, AGAP006510-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation