Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynein heavy chain 3, axonemal.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11748 g11748.t1 isoform g11748.t1 18218381 18234049
chr_1 g11748 g11748.t1 exon g11748.t1.exon1 18218381 18218686
chr_1 g11748 g11748.t1 cds g11748.t1.CDS1 18218381 18218686
chr_1 g11748 g11748.t1 exon g11748.t1.exon2 18218966 18219595
chr_1 g11748 g11748.t1 cds g11748.t1.CDS2 18218966 18219595
chr_1 g11748 g11748.t1 exon g11748.t1.exon3 18219657 18219816
chr_1 g11748 g11748.t1 cds g11748.t1.CDS3 18219657 18219816
chr_1 g11748 g11748.t1 exon g11748.t1.exon4 18219879 18219966
chr_1 g11748 g11748.t1 cds g11748.t1.CDS4 18219879 18219966
chr_1 g11748 g11748.t1 exon g11748.t1.exon5 18220038 18220129
chr_1 g11748 g11748.t1 cds g11748.t1.CDS5 18220038 18220129
chr_1 g11748 g11748.t1 exon g11748.t1.exon6 18220191 18220521
chr_1 g11748 g11748.t1 cds g11748.t1.CDS6 18220191 18220521
chr_1 g11748 g11748.t1 exon g11748.t1.exon7 18220590 18220741
chr_1 g11748 g11748.t1 cds g11748.t1.CDS7 18220590 18220741
chr_1 g11748 g11748.t1 exon g11748.t1.exon8 18220809 18222193
chr_1 g11748 g11748.t1 cds g11748.t1.CDS8 18220809 18222193
chr_1 g11748 g11748.t1 exon g11748.t1.exon9 18222252 18225242
chr_1 g11748 g11748.t1 cds g11748.t1.CDS9 18222252 18225242
chr_1 g11748 g11748.t1 exon g11748.t1.exon10 18225300 18226172
chr_1 g11748 g11748.t1 cds g11748.t1.CDS10 18225300 18226172
chr_1 g11748 g11748.t1 exon g11748.t1.exon11 18226233 18226330
chr_1 g11748 g11748.t1 cds g11748.t1.CDS11 18226233 18226330
chr_1 g11748 g11748.t1 exon g11748.t1.exon12 18226393 18226597
chr_1 g11748 g11748.t1 cds g11748.t1.CDS12 18226393 18226597
chr_1 g11748 g11748.t1 exon g11748.t1.exon13 18226654 18227465
chr_1 g11748 g11748.t1 cds g11748.t1.CDS13 18226654 18227465
chr_1 g11748 g11748.t1 exon g11748.t1.exon14 18227530 18228133
chr_1 g11748 g11748.t1 cds g11748.t1.CDS14 18227530 18228133
chr_1 g11748 g11748.t1 exon g11748.t1.exon15 18228209 18228313
chr_1 g11748 g11748.t1 cds g11748.t1.CDS15 18228209 18228313
chr_1 g11748 g11748.t1 exon g11748.t1.exon16 18228487 18229100
chr_1 g11748 g11748.t1 cds g11748.t1.CDS16 18228487 18229100
chr_1 g11748 g11748.t1 exon g11748.t1.exon17 18229707 18230100
chr_1 g11748 g11748.t1 cds g11748.t1.CDS17 18229707 18230100
chr_1 g11748 g11748.t1 exon g11748.t1.exon18 18230162 18230427
chr_1 g11748 g11748.t1 cds g11748.t1.CDS18 18230162 18230427
chr_1 g11748 g11748.t1 exon g11748.t1.exon19 18230487 18230546
chr_1 g11748 g11748.t1 cds g11748.t1.CDS19 18230487 18230546
chr_1 g11748 g11748.t1 exon g11748.t1.exon20 18230607 18230922
chr_1 g11748 g11748.t1 cds g11748.t1.CDS20 18230607 18230922
chr_1 g11748 g11748.t1 exon g11748.t1.exon21 18230986 18231759
chr_1 g11748 g11748.t1 cds g11748.t1.CDS21 18230986 18231759
chr_1 g11748 g11748.t1 exon g11748.t1.exon22 18231825 18232628
chr_1 g11748 g11748.t1 cds g11748.t1.CDS22 18231825 18232628
chr_1 g11748 g11748.t1 exon g11748.t1.exon23 18232689 18233227
chr_1 g11748 g11748.t1 cds g11748.t1.CDS23 18232689 18233227
chr_1 g11748 g11748.t1 exon g11748.t1.exon24 18233920 18234049
chr_1 g11748 g11748.t1 cds g11748.t1.CDS24 18233920 18234049
chr_1 g11748 g11748.t1 TSS g11748.t1 NA NA
chr_1 g11748 g11748.t1 TTS g11748.t1 NA NA

Sequences

>g11748.t1 Gene=g11748 Length=12729
ATGAAGAAGATCCGAAAGTTTAAAAACTCTCAGCGGCGACCAATTGAAGAAGTTCCTTTT
TATAAGGTTCAACATAAATTTGATGATTTACCATTGGATCCTTTTCGACCGTTTATAGCT
GAAGAAATTAACAAAATAAAGCAATCAAAAGCCGATGAATTCTTTTATGATTTTGATTTA
TTTACGGCACCCCATGGTAATGGACAAACAAAATTTACTGGTTTAATACTGCCTGATATC
AACGAAAATGCGACACAAAATCAAACTTCTGATTTTCCCACAAGCATGATGGGTAATGTA
AATCATAAAGAAAAACGCATAAAAGAAGTCACGAAAAGTCTTATCTCAATTTATAAAAGG
AAACGAATGCAAACTTTTTTCAATTTAAGTACAGCAAAAGCAGCAATGCGTTCAAAACAA
TTTTTCAAAAATTATCTTAATTTACCTATCGAAAAAAAATTAACAAGATATAAGACAAAA
TTCCACAAACCGAAACAAAAGCCTATAAATTATAAAATAGAATATGAAAAACTGCGTGGT
CTTCGTGAATCGGAAGAGGAGTTAGCCAAAGTACAAGCATATATTGATAAAATGATTCAA
AAGAACATTAAAAAATATGAAGAAGAAAAACGAAAGCAACAATTGGCAGAAGAACTTTCT
CAAAAATCGTCACGTCCGCAGCTTAAAAAACGAAAGAAATTGATGAACAATGAAGAGTTC
TTAAAACATTTAAAAACACGTGATCGAGAGCAATCACAGTACTTACAAGCTTTATTGCCT
ATACATCCAGATGAGCAAAAAATCAAAATAATTTCACAATACAATGAACGCTATAGGAAA
GCATCAATGAATTTTAGTGAATTAATGCGACAAAGAATGCTTAATCTATTTGATGAAATA
TCAGTCAATGAGGTAGAAATCTATCCATCAAAATATTTTAAGAAAATCATTCCGCGAATT
GACGACAGAAAATTACTTTGGCAGCGAGTTTATAAATTTATAAAAGAAGAAGAACGGCTT
TGGCCAGAAATCAAAAGTGAAGTCATGTTAATGGATTTTTTACTTAATCCTGAAAATAAA
ATTAATCGTGAAACTGCTATCATGATCATTAGCTTACTTATGGATTTACAAGAAGATTAT
CGATATTGTATCAAGCGTGCTTTCATGAGTTACATTTTGAATTCCGAAGCAGAACGAAAG
CGTTTACAATTAGAAGCTGAGCCGCCAGAATTCCCTATAGCAACTATAAAGGCACCAGTG
CCATGGAAGTGCTCAGTTCAAATTGCGAAAAATCGTTTGGAAGAAGTGCTTATGGTCAAT
CATCCTCTTTTACAAGCTATTCAAATGCTTTGGTATAATTTGTATCATGATTTACTTATT
GTAGACACTTCAAAATTTTATAAATGTGAAATTCCATATCATGCTGACAACATTACTGAA
ATAATCAATAGCTGTTGCAAAATTACTAGAGATATTTTGGTAAATGATTGGATGCCTAGA
GTTGCTGATTTGGTGGAAGCAATGCAAGAATATTGGAAAGATTTAGTTCCAAAGAATTCT
ACTTATGGCGGACGGGCACAACTTCTTTTTAATTGTATTCATGCTTTGGTTTCATTACAA
TTACAAGGGCTTATAAAACGCAGTCTTGATCATTTAGCTGAAACAATCGAAGTGTATAAA
AGTGGAAATTTACAGTATACTTATAATCCAAAAAGCTCCAAACTGAAGCGACGACCATTT
ATGACACTCATTGTCTCGGTTGTAGGTAAACACGAAGATGAAAGTGATGAATCATCTGAA
AAAGATTCAGCTTTGTATCAAATCGATGATGATGACCCAAACATCCTTTCAATGGAATTA
AAATCTGATAAATCGATTTTAGAAGAACGATCAGCATCTTTTATCATGAATAATAGTGGA
AAAATGATAATTGAGCCATATATGGAAGAATTACCAGATCTATTCAAAAGTTATTTTGTT
AAAATCCTTAAAGTTGGTTATAAAATTCCTCGACTAGAGTATTATATGACACAAAATAAA
GAGCTTTTAGGATATCTTCATTATATTCATGAAGATCATGTTGATATGTTAAAATTATAT
GATAAAATCAAAAAAATTGTCCAAAGGAATCAAACGGGACCGACAACATATCTATATCCG
ATGTATCGCTTTTATTTTCCAATATTAGCAAACAAGATGAAATATATTACTGAATCAATT
TTTGAACGTGAAATTCCATCTTTACAGATATTCAAAGAATTAATGGAGAAATTCAATCAA
TTATTACATGGGATTTATTATTTACGTGATTTTATTCCATTAAATTTGTTTATGCTTGAT
AATCGTATCGTGAACAGAGTTCTTGAAAAACTTGTACGTGAACTCAAAAATTTTGTCACT
ACCTACTTTACAACATTGAATCAAGTTGAGAATCGTCGAATGTGTGATGAATTTGAAGAA
ATGTCCCTTCATTCAGGCGAACGACCTAGCAAAACACCAGAAGTTGTTGCTCTTCAAAAT
TATTTGGTTGTTTGTCGTGAAGAAAAACTTTTTAGACTCAAAAATGAGATTCAGCATGTA
AAAGAACGAGTCATGTTCCTTTTAACATATGCATCATTAACACAGGAAGATATAAATCTC
AATTCACGTTTATTTTTATGGCCTAGTGAATTAGAAAAAGTTCTTCAACTGTCTGGTGCT
CGTTTAGCAGTAGTAAGAGAGAATTTAGAAACAGCATTGAAGGAACGTCGATCAGAATTT
GAACAATATATGCAAGCAGAAAAGAAAAAAATGGATTCATTCCGATTACGTGATGTTCGT
GAAGTACTATCTCTTGACGATTTGAAAGAAAAGGTCACAACAGTTGATGGACTGATGAAT
ACATTAGAGATATGTAATAAAGAAGCAAAATCAATCAATATTGATGAAAATCTATTACAA
ATAGATGTTTCATATTTCCCAATACTTACTGAAATGATTGAAAAAATGGAACCAATTGAA
AAATTATGGCATACAGCATATCATTTTGAGTCATGTTACGAAGTATGGTTCTATGGGAAA
TATGTTGGTCTTAATGCTGATAATATTCGAGAAGAAGTGGAAGAAATGACAAAAACAATT
TATAAACTTACCAAAGCATTAACAACAAATCCATTTGCAAAAAGAATTGCTGAACAGATT
CGTTTGAAAATTGATAAATTTCGTGTATACATACCAATTCTTGAATCAATTTGTCGACAA
GGTCTTGTCGATCGTCATTGGGATCTCATTTCACAAGAGCTTGAGTATGATTTGAATTTA
CAATTGATAAATATGCAAGATGAGTGGAAAGACATGAAATTCGATGTAACACGTTATCGA
GATTCAGATGTCTACATTCTAGCTAGTTTAGATGATGTACAAGCACTTCTCGATGATCAT
ATTCTTAAAGCACAAGCTATGCGTGGTTCACCTTATATTGTAGCACTTGGAAGGCGTGCT
GAAGATTGGGAACAAAAATTAATTTCCATGCAAGATATTCTTGACGTATGGCTTCGAGTG
CAAGCAACATGGATGTATCTTGAGCCAATTTTCGGGTCAGAAGATATACTTAGACAAATG
CCAACTGAAGGAAGAAATTTCAAGAATGTTGACCGAATGTTTCGAAAAATTATGGCACAT
ACAGTATCCGATCCTCATGTAATTGAAACAACTGATTATCCTGATATGTTATCACAACTT
CGTACTGGTTTTGAAGAACTTGAAGGAATACAAAAAGGACTAAATATGTACCTCGAAAAA
AAAAGATTATTTTTTGCACGATTTTTTTTCTTATCTAATGATGAACTGCTTGAAATACTT
GCTGAAACTAAAGATCCATCACGTGTTCAACCACATCTTAAAAAGTGTTTTGAAGGGATT
AACGCACTTAATTTTGACAATAATGGAGATATAATAGCAATAGTGTCTTCTGAAAAAGAA
GTTGTAAACCTTTCTCGTAAAATAAGTCCAGCTACAGCTAATGGTTTGGTTGAAAAATGG
CTTAAAGATGTAGAATCAGTAATGATAGAGAGCATAAAAGAACAAATATTCAAGTCATCA
GAAGCTTATTCAATGGAGCTTCGCAATGAATGGGTTCTTAAATGGCCAGGGCAAGTTATT
TCATGTGTAACATGCATGTCTTGGACACAAGAAGTGGAAAGAGCTATTCAAGAAAATGTC
AAAGAACAATATTTACAAACATGTAATGAGCAAATTTTTGATCTTGTTGAATTGGTTCGT
GGAAAGTTGAGTACAGGAGAACAGTATACTATTGAAGCTCTTATAGTCTTAGACGTACAT
GCACGTGATATTGTAAGTTTGCTTATTGATGAAAACGTTAATGATCAAAATGATTTCAAT
TGGATTGCACAATTGCGTTATTATTGGCGAACAAGTCCCGAAAAGCAAGGATATGTATCA
GTATGTATGGTATCAACAGACGTTGAATATGGCATGGAATATTTGGGAAATACATCGAGA
TTAGTTATTACTCCATTAACAGATCGTTGTTTTCGAACATTAATGCAAGCGATTAAATTA
AATTTAGGTGGAGCACCGGAAGGTCCGGCCGGAACTGGAAAGACAGAAACTTGCAAAGAT
CTTGCCAAAGCAGTTGCAAAGAAATGTGTGGTCTTCAATTGTAGTGATGGTTTAGATTAT
AAAGCACTTGGAAAGTTCTTTAAAGGTCTTGCACAATCGGGATCATGGGCATGTTTCGAC
GAATTTAATCGTATTGAGCTTGAAGTATTATCGGTAGTAGCTCAACAAATTTTAACAATT
CAACGTGCAATTCAAAAAGGTGTATCTAAATTTGTATTTGAAGACACTACGCTAAAATTA
GATCCAACTTGCAATATTTTCATCACTATGAATCCTGGCTACGCTGGAAGAAGTAATTTG
CCTGATAACTTGAAAATTTTGTTTCGTACATGTGCCATGATGATACCTGATTACAGCATG
ATTGGTGAAATTACATTGTATTCAAATGGCTTTGAAAATGCACGCATATTAGCACAAAAA
ATTGTTTTGACTTACAAACTTTGTTCGGAACAATTGTCTTCTCAACATCATTATGATTAT
GGTATGAGAGCAGTTAAATCTGTCTTGCTTGCTTCAGCTGCTCTACGTAAAGATTCACCA
AATATGCCAGAAGAACAGATTGTTTTACGCGCTATAATTGACGTAAATTTGCCAAAGTTT
TTACAACAAGATATTCCACTTTTTGAGGGAATTTACAAAGATTTGTTTCCAAATATCGAT
ATTCCTGAAGCATCACGTGATGACATTAAAAAATATTTACATATTAAAATTAAAGAGAAA
CGATTACAACCGACACCTTGGTTCTTTGAAAAAGTTCTTCAGATTTATGAGATGTTACTC
GTTAGACATGGTCTTATGATTGTTGGTGATCCAATGGGTGGTAAAACAACAGCTTATCAA
CTGCTAGCAGAAGTTTTAAAAGAAATTCGCAATGATCCAAATGCTCAAATGAAAGAGTTT
TCAGTTAACTATCGCATTATAAATCCAAAGTCAATTTCTACTGCTCAATTGTATGGATGT
TTTGATCCGCTTACTCATGAATGGTCTGATGGTGTTATTGCATCATCTTTTCGTGATATG
GCATATTCTAATACAAACGAAAGACATTGGCTTGTTTTCGATGGTCCAGTGGATGCTATA
TGGATTGAAAACATGAATACGGCACTCGATGATAATCGAAGATTGTGTCTTATGTCTGGT
GAAATTATTCAAATGACAAATAAGATGAATCTAATTTTTGAACCTATTGATTTGGAAGCC
GCTTCACCCGCTACTGTATCACGTTGTGGTATGATTTATATGGAATCATCACAGCTTGGA
TGGGAGACTTTACATAAATCATTTATGCTTCAATTACAAGATAAAGGAATAACCGAGATA
TATGTTGCTCTTTATGACAGTCTTGTAGAATGGCTCATTCCACAAACATTAGAAACATTA
AAACTATGTCAACAAATCATTTACCTTTCTTCAATGCACATGTATCAAATGCTTTCAAAA
TTCTTCATGAATTTTCTTCAACATCAAAGTAATTATAATCTTACTTGGTTTCAACAAACA
TTTCTTTTCTGCTATGCATGGGCTTATGGTTCACATCTTACAAATGAAGGACGAAAATGT
ATGGAAACTGTTTTGAGAAAAATTCTTTATGGTTCAAATGAAAATCAAAAGATTTCAAAA
CCAAAAGGTTTTACACTCAATCGTGGTCAAATGTATCCTGAAAAAATGAATTACCTTGAT
TATAAATTTGATGAAATTGAAACATGGTGGCCATGGCTTAAATCAGAAGAATGTCAATTT
GGGCCAGATGCAACAATTTCAGATTTAGTGGTACCAACAAAAGAAAATTGTTATATTAAC
TATTGGGCGAATCATTGTGTAACACATATGATTCCTTTGCTCTTAATTGGACCAACAGGA
ACCGCCAAAAGTTTGACTGTCAAAAACTTTCTGCAAGATCTTCCTAAAGAGAAATATATG
ATGAATATTCTCAATTTCTCTGCAAGAACCACAGCACATCAAGTTCAAGAGCAGGTCATG
TCAAAACTCGATAGAAGACGCAAAGGTGTTTTTGGTCCACCTTCTTTAAAACATTGTATA
AATTTTGTGGATGATGTTGCAATGCCTGCACGAGATGCATATGGATCACAAGGACCCTTA
GAACTTATTCGGCAACTATTAGATCATGGATATTGGTCTGATTTAACTGACACGAGTAGC
ATTGAGCTTATTGATTTACTATTAATAGCAGCAATGGGATTACCCGGAGGTAGCAATTTC
ATGCCTCAGCGCCTTTATAGACACATGTTCTGTCTTTCAGTTGATTCATTTGATGAACAA
ACATTGATGAGAATTTTTACATCAATTGGGGAGTGGCATTTTGCTAAAGGCTATAACGAA
TCCATTTCAAGACTTGCACGAAATTTAGCTGCTGCAATAATTGATGTTTATAAAGGTGCA
GTACAATTTTATTTACCAACACCTGCAAAAAGCCATTATACATTTTCGTTGCGTGATATA
ACAAGAGTCTATCAAGGATTAAGCCTTGTTCCAGCGAAAAAGTTATCTGATGTTGAAAAA
TTAACACGTTTATGGATTCATGAAATTTATCGTGTATTTTATGATCGTTTAGTAGATGCA
AAGGATCGTGAACATCTTTTGTCATTAGTCGATAAATCATGCAATAACAATTTACGTATT
AAATTAGAACAAGCATTTGGAAATCGTGTATTGCCTGGTGAAAAGGTTTCTGAAAAGCAT
GTACGTGATTTACTTTTTGGAAATTATATGGAACCGGATGCTGATCCAAAAATATATGAT
GAAGTGGAAAATTGGCCAAAGCTTGAAAAGAATATGATGTATTATCTAAATGAGTTTAAT
ATTTTATCAAGTTCACCAATGGACTTGGTACTCTTTCGTTTTGCAATCGAACACATTTCA
CGTGTTTGTCGTATACTTCAAATGCAATGTGGTCATATAATGACAGTTGGTCTGGGGGGT
TCAGGTCGTAAATCAGCCATCAAATTAGCTGCAAGCATAAATGATGCTCATCTATTTCAA
ATTGAAGTAACACGAACTTACGGAATGAATGAATGGCGTGAAGATTTAAAAAAATTGCTA
ACTCAAGCCGGAATTGATTCGAAATCTGTAGTATTTCTTTTTAGCGATTCGCAAGCCAAA
GAAGAAGCTTTCATTGAAGACATCAATTCATTATTAAATACAGGAGATATTCCTAATCTA
TTTCAAGCAGAAGAGAAGGCAACTATTTTGGAAAAAATGCAAGTTGTTGCTAAAGCATCA
GGAAAAGTTATTGAATCATCACCTATCGCTATGTATGGAATGTTTATTGAACGTGTACGT
GAATCATTACATGTTGCTTTAGCTTTTTCACCCATTGGAAATTCTTTCAAAAAGCGAATT
CGCATTTATCCCTCATTAGTAAATTGTTGTACAATTGATTGGTATACAACATCATGGCCT
GAAGATGCTCTTTTTAAAGTGGCAGAGCATTTTATTAAATCAATGGATTTACCTGGTAGT
GATGACACATTTTCTATTTCATCAATTGGTACTACAAGTGATGATAGTGAAACTCGATTA
AGAGATCGAAAATTATCACCATTAGAGAAAAAACTTGTCGATATTGTGTTAATATTCAAT
ACAAGTGTCGTTGAGGGTAGCGAAAAATTTTATCGTGAATTACGAAGAAAGAACTATGTT
ACACCAACTTCATATCTTGAAATGTTACGGTTATTTAAAGTGCTCTATAAACAGACGTTC
CTTGATATAACAATGCAACGAGATAGATATACAACTGGACTTGAGAAACTCGAATTTGCT
GCTAGTCAAGTTACTGTAATGCAAAAGAAATTACAAGATCTCCAACCACAATTAAAAGAA
ACTTCTGATGAAACTGAAAAAATTATGGTTAAAATAGAACGTGACACAGCTGAAGCTGAA
AAGAAGAAAGAAGTTGTAGGTGCTGATGAAGCTGCTGCAAATGAAGCAGCTGCAACATCA
CAAGCAATTCGTGATGATTGTGAAAGTGATTTAGCGGAAGCTGTCCCTGCATTAGAAAGT
GCTTTGCTTGCATTAGATACATTAAAACCAGCTGATATAACTGTCGTTAAATCAATGAAA
AATCCACCGGCCGCTATAAAACTTGTTCTTGAAGCTGTTTGCGTACTTAAAGGTTTAAAA
CCTGATAGAAAACCAGATGCATATGGTCGCTTGGTAGATGATTATTGGGCAGCTTCACAA
AAAATGCTTGGTGATATGAAGTTTTTGGAAAGTCTTCGCCATTTCGATAAAGACAATATA
CCAGCACCTATAATGAAGAAAATTCGCGAAGTTTACATATCCGATCGTGACTTTGTACCA
GAAAAAATAAAAGCTGTATCAACTGCATGCGAAGGCTTGTGTCGTTGGATCAGAGCAATG
GATGTTTATGATCGTGTTATAAAAATAGTTGCCCCGAAAAAAATTGCATTAGGAGCTGCT
GAAAGTGATTTAGCTGCTCAAATGGAAAAATTGAATGCTAAAAAAGCGGAATTGCAAGAA
ATATTAGACAAATTGCAGACTCTTAACGATTCTTTCGCAGAAAAATCTCGAGAAAAGAAA
CGACTTGAAGATGAAATTGACAATTGTGAGAAAAAACTCCAAAGAGCTGAGCAATTGATC
GGAGGTCTTGGAGGTGAAAAAGATCGATGGAGTGAGAATGCTTCAAATTTGCATAAAAGT
CTCTCAAATGTTGTTGGTGACGTTTTGTTGGGTTCTGCTTGTATTGCATATTTGGGTTAT
TTTTCAACTGAATATCGAAATGAAATTTTACACAATTGGAATAAATTGTGCACTGAACAA
CGACTTCCATGTACTGAAAAATTTTCTCTCGTGAGTTTGGGAAATCCTATGGAAATAAGA
CAATGGGCAATTTGTGGACTTCCTTCAGATAACTTTTCAATTGAAAATGGTATAATTGTT
GCTAATTCACGACGATGGTGTCTCATGATTGATCCACAAGGACAGGCAAACAAATGGATT
AAAAAGCTGGAAAAGGATAATGATTTAAAAGTTTTGCAACAGACAGATAGCAATTATATG
AAAGTTTTAGAAAAAGCTATAACTTCAGGTACGCCTGTACTACTAGAAAATATTGGTGAG
ACAATTGATTCAGGTTTCAATACCATTCTCGAGAAGAACATTTTCAAACAAAAGGGAAAA
CAATTGATCAAATTTGGAGATGGAATTATTGAGTATAATAGTAATTTTAGATTCTACATT
ACTACTTGTTTAAAAAATCCACATTACTTGCCAGAAACAGCTGTTATGGTAACTTTATTA
AATTTCACTATTACTGAACAAGGATTACGTGAACAATTATTGGCAACAGTTGTCGTACAA
GAACGTCCAGATTTACAACAAAAGAAAGAATCATTGATTGTTGAATCTGCTAAAAATCGT
AATGCTTTATATAATGCTGAAACAAAAATTCTTCAAGTTCTTTCATCTGCTGAGCAAAAT
ATTTTAGAGGACGAGAATGCAATAAATATTCTCACATCAAGTAAGGCATTATCAGAGGAC
ATACAAGCAAAGCAATTAATCGCAATATCTACAGAAGTCGAAATTGATACAGCACGACAA
AAATATATTCCCGTAGCTAAACACTCTGCTGTCTTATTTTTTTGTATAAGTGAACTTTCG
AATATTGATCCTATGTATCAATATTCACTAACATGGTTTTTAACTTTATTTATTACAAGT
ATAAAAAAATCTCCAAAATCTGAAAATCTCGAAGAAAGATTAACGCATTTAAATGCATTT
TTTACACGAACAATTTATGAAAATGTATGCAGATCACTTTTTGAGAAAGACAAATTAATT
TTTTCCTTTTCACTTTGCATTGGAATTTTAACTGCTCGCGGAGAAATTGAGGAACATCTT
CTGCAATTTTTTCTTTCTGGAGGAATTTTACATAACAATAATATAATAAGCGCTAATCCT
GCGTCTGATTGGCTTAGTGATAAAGCATGGAATGATATTTTAAGGACAGAATGTATTGAA
GAATTGCGTGGTATTCATGATCATTTCATTTCAAATATAGAAAAATGGAAGGAATTTTAT
GATTTATCAAATCCAGAGGAATCAAAGTTTCCTCAACCATTTGACAGTATATCGGACTTT
GTTGCCTTGATTTTATTAAAAGCATTAAGACCTGATAAAGTTATTCATGCTGTTAAAATA
TTTATAATTCACAATATGGGTATAGAATTTATTCAATCACCACCATTTAATTTGCAAGCA
TCATTTAATGATAGTAGTCGCATAATTCCATTAGTTTTCATTCTTTCACCTGGTTCTGAT
CCAATGGATAATATTTTAATGTTTGCACAAGAAAATGGAATGTATGACAAATGTAAATCT
ATAAGTCTTGGTCAAGGTCAAGGTCCACGTGCAGAAAAATTAATTGAAGAGGGTACACGT
TTCGGTCATTGGATTATTTTACAAAATTGTCATGTAGCTGAATCATGGATGAGTGAACTT
GAGAGAATTTCAATGGATTCACAATATATTGAAGCAAATGCTCATTTAAACTTTCGTTTG
TGGATTACATCTTATCCTGTTAAAACATTTCCTGTATCAGTTTTACAAAATTCTGTGAAA
ATGACAAATGAAGCACCAAAGGGTCTTCGAAATAATATGCTAAGATCTTACAACTCTGAT
CCATTATATGATGAAGATTTTTACAAATTATCTGTATTGAATGAAGAAGTTTCAAAATTA
TGGCTACGTGGTATTTTCTCCTTGGTATTTTTTCATGCAGTTATTCAAGAACGAAGAGAT
TTTGGTGCACTCGGATGGAACATTTTATACGAATTTAATGAATCTGACTTAAAAATTTCT
TTGATACAATTAAAAATGTTTATTGAGCAATATGGAAAAATTCCATTTCAAGGACATACA
TACTTAACTGGTGAATGTAATTATGGTGGTCGAGTTACGGATGATAAAGATAGGCGTTTA
CTAATGTCTTTATTAAAAAGAATTTACAACAAAGACGCTACTGAAACTGATGACTTTCAA
TTATCAAAATTGGATTCATATCGAATTCCATTGATTCCAACAAGAAATAATAGTATTGAG
TATATAATGTCTCTACCGTTAACAACATCACCTGAAGTATTTGGCTTGCATGATAATGCA
GATATAATGAAAAATTTTAATGAAACTAATAATTTGATTCAAGGAGTGTTTATGACGCAA
ACCATGTTGATATCTTCATCACGTGAACCATCACATCAAAATATACAAGAAATAGTTGTT
GATCCAGTATTTGATATATGCATGAACATTTTGAAAAGTTTACCAGATACATTTGATGAA
GAATTAGCTGCCAGAAAATATCCAATTGAATACACAAATTCAATGAATACAGTCTTGCGA
CAAGAGCTCATTCGCTTTAATAATCTTCTTGAATTTATCAAAGTATCATTAAATGATACG
AAAAGAGCTATATTAGGTCAAATAGCAATGATACCAGAACTAGAAAGTGTACATAGATCG
ATGTCATTGGGAACAATACCTGAGTCATGGTCTAAAAAAAGTTATCCATCATTGAAGCCA
TTAGGATCATATATCAATGATTTTCTCTCGAGAATTGCTTTTCTTCAAAAATGGCTTGAA
GAAGGAGAACCAAATGTTTATTGGATTAGTGGATTTTATTTTACGCAATGTTTTCTAACT
GGTGTTCTACAAAACCACTCTAGAAAAAATAATTTTCCAATTGATAATCTTCGTATGAAA
TTTGATGTGACAGATTTTGAAGTAAGCACACAAGAGAGTGTTGAATTTGGAGTTTTCATT
GGGGGTTTATTCTTAGAAGGATGTCGCTGGAATCGTCAATTTCATGTTCTCGATGAATCC
TTTCCAAGAGTATTGTTCGATACACTTCCTGTAATAACAATGACGCCAACAATGAAGACT
GAAGATAATCAGTATGATGATGAGAAAAAATACGAATGTCCAATTTATAAAACTATTGAG
CGACGCGGAATTTTATCAACTACAGGACATTCTTCAAATTTCGTCATGTTTATTCAACTT
AATACTGAAAAAAACCAAAATCATTGGATAAATCGAGGCGCTGCATCAATTTTGAGTCTG
AATGATTAA

>g11748.t1 Gene=g11748 Length=4242
MKKIRKFKNSQRRPIEEVPFYKVQHKFDDLPLDPFRPFIAEEINKIKQSKADEFFYDFDL
FTAPHGNGQTKFTGLILPDINENATQNQTSDFPTSMMGNVNHKEKRIKEVTKSLISIYKR
KRMQTFFNLSTAKAAMRSKQFFKNYLNLPIEKKLTRYKTKFHKPKQKPINYKIEYEKLRG
LRESEEELAKVQAYIDKMIQKNIKKYEEEKRKQQLAEELSQKSSRPQLKKRKKLMNNEEF
LKHLKTRDREQSQYLQALLPIHPDEQKIKIISQYNERYRKASMNFSELMRQRMLNLFDEI
SVNEVEIYPSKYFKKIIPRIDDRKLLWQRVYKFIKEEERLWPEIKSEVMLMDFLLNPENK
INRETAIMIISLLMDLQEDYRYCIKRAFMSYILNSEAERKRLQLEAEPPEFPIATIKAPV
PWKCSVQIAKNRLEEVLMVNHPLLQAIQMLWYNLYHDLLIVDTSKFYKCEIPYHADNITE
IINSCCKITRDILVNDWMPRVADLVEAMQEYWKDLVPKNSTYGGRAQLLFNCIHALVSLQ
LQGLIKRSLDHLAETIEVYKSGNLQYTYNPKSSKLKRRPFMTLIVSVVGKHEDESDESSE
KDSALYQIDDDDPNILSMELKSDKSILEERSASFIMNNSGKMIIEPYMEELPDLFKSYFV
KILKVGYKIPRLEYYMTQNKELLGYLHYIHEDHVDMLKLYDKIKKIVQRNQTGPTTYLYP
MYRFYFPILANKMKYITESIFEREIPSLQIFKELMEKFNQLLHGIYYLRDFIPLNLFMLD
NRIVNRVLEKLVRELKNFVTTYFTTLNQVENRRMCDEFEEMSLHSGERPSKTPEVVALQN
YLVVCREEKLFRLKNEIQHVKERVMFLLTYASLTQEDINLNSRLFLWPSELEKVLQLSGA
RLAVVRENLETALKERRSEFEQYMQAEKKKMDSFRLRDVREVLSLDDLKEKVTTVDGLMN
TLEICNKEAKSINIDENLLQIDVSYFPILTEMIEKMEPIEKLWHTAYHFESCYEVWFYGK
YVGLNADNIREEVEEMTKTIYKLTKALTTNPFAKRIAEQIRLKIDKFRVYIPILESICRQ
GLVDRHWDLISQELEYDLNLQLINMQDEWKDMKFDVTRYRDSDVYILASLDDVQALLDDH
ILKAQAMRGSPYIVALGRRAEDWEQKLISMQDILDVWLRVQATWMYLEPIFGSEDILRQM
PTEGRNFKNVDRMFRKIMAHTVSDPHVIETTDYPDMLSQLRTGFEELEGIQKGLNMYLEK
KRLFFARFFFLSNDELLEILAETKDPSRVQPHLKKCFEGINALNFDNNGDIIAIVSSEKE
VVNLSRKISPATANGLVEKWLKDVESVMIESIKEQIFKSSEAYSMELRNEWVLKWPGQVI
SCVTCMSWTQEVERAIQENVKEQYLQTCNEQIFDLVELVRGKLSTGEQYTIEALIVLDVH
ARDIVSLLIDENVNDQNDFNWIAQLRYYWRTSPEKQGYVSVCMVSTDVEYGMEYLGNTSR
LVITPLTDRCFRTLMQAIKLNLGGAPEGPAGTGKTETCKDLAKAVAKKCVVFNCSDGLDY
KALGKFFKGLAQSGSWACFDEFNRIELEVLSVVAQQILTIQRAIQKGVSKFVFEDTTLKL
DPTCNIFITMNPGYAGRSNLPDNLKILFRTCAMMIPDYSMIGEITLYSNGFENARILAQK
IVLTYKLCSEQLSSQHHYDYGMRAVKSVLLASAALRKDSPNMPEEQIVLRAIIDVNLPKF
LQQDIPLFEGIYKDLFPNIDIPEASRDDIKKYLHIKIKEKRLQPTPWFFEKVLQIYEMLL
VRHGLMIVGDPMGGKTTAYQLLAEVLKEIRNDPNAQMKEFSVNYRIINPKSISTAQLYGC
FDPLTHEWSDGVIASSFRDMAYSNTNERHWLVFDGPVDAIWIENMNTALDDNRRLCLMSG
EIIQMTNKMNLIFEPIDLEAASPATVSRCGMIYMESSQLGWETLHKSFMLQLQDKGITEI
YVALYDSLVEWLIPQTLETLKLCQQIIYLSSMHMYQMLSKFFMNFLQHQSNYNLTWFQQT
FLFCYAWAYGSHLTNEGRKCMETVLRKILYGSNENQKISKPKGFTLNRGQMYPEKMNYLD
YKFDEIETWWPWLKSEECQFGPDATISDLVVPTKENCYINYWANHCVTHMIPLLLIGPTG
TAKSLTVKNFLQDLPKEKYMMNILNFSARTTAHQVQEQVMSKLDRRRKGVFGPPSLKHCI
NFVDDVAMPARDAYGSQGPLELIRQLLDHGYWSDLTDTSSIELIDLLLIAAMGLPGGSNF
MPQRLYRHMFCLSVDSFDEQTLMRIFTSIGEWHFAKGYNESISRLARNLAAAIIDVYKGA
VQFYLPTPAKSHYTFSLRDITRVYQGLSLVPAKKLSDVEKLTRLWIHEIYRVFYDRLVDA
KDREHLLSLVDKSCNNNLRIKLEQAFGNRVLPGEKVSEKHVRDLLFGNYMEPDADPKIYD
EVENWPKLEKNMMYYLNEFNILSSSPMDLVLFRFAIEHISRVCRILQMQCGHIMTVGLGG
SGRKSAIKLAASINDAHLFQIEVTRTYGMNEWREDLKKLLTQAGIDSKSVVFLFSDSQAK
EEAFIEDINSLLNTGDIPNLFQAEEKATILEKMQVVAKASGKVIESSPIAMYGMFIERVR
ESLHVALAFSPIGNSFKKRIRIYPSLVNCCTIDWYTTSWPEDALFKVAEHFIKSMDLPGS
DDTFSISSIGTTSDDSETRLRDRKLSPLEKKLVDIVLIFNTSVVEGSEKFYRELRRKNYV
TPTSYLEMLRLFKVLYKQTFLDITMQRDRYTTGLEKLEFAASQVTVMQKKLQDLQPQLKE
TSDETEKIMVKIERDTAEAEKKKEVVGADEAAANEAAATSQAIRDDCESDLAEAVPALES
ALLALDTLKPADITVVKSMKNPPAAIKLVLEAVCVLKGLKPDRKPDAYGRLVDDYWAASQ
KMLGDMKFLESLRHFDKDNIPAPIMKKIREVYISDRDFVPEKIKAVSTACEGLCRWIRAM
DVYDRVIKIVAPKKIALGAAESDLAAQMEKLNAKKAELQEILDKLQTLNDSFAEKSREKK
RLEDEIDNCEKKLQRAEQLIGGLGGEKDRWSENASNLHKSLSNVVGDVLLGSACIAYLGY
FSTEYRNEILHNWNKLCTEQRLPCTEKFSLVSLGNPMEIRQWAICGLPSDNFSIENGIIV
ANSRRWCLMIDPQGQANKWIKKLEKDNDLKVLQQTDSNYMKVLEKAITSGTPVLLENIGE
TIDSGFNTILEKNIFKQKGKQLIKFGDGIIEYNSNFRFYITTCLKNPHYLPETAVMVTLL
NFTITEQGLREQLLATVVVQERPDLQQKKESLIVESAKNRNALYNAETKILQVLSSAEQN
ILEDENAINILTSSKALSEDIQAKQLIAISTEVEIDTARQKYIPVAKHSAVLFFCISELS
NIDPMYQYSLTWFLTLFITSIKKSPKSENLEERLTHLNAFFTRTIYENVCRSLFEKDKLI
FSFSLCIGILTARGEIEEHLLQFFLSGGILHNNNIISANPASDWLSDKAWNDILRTECIE
ELRGIHDHFISNIEKWKEFYDLSNPEESKFPQPFDSISDFVALILLKALRPDKVIHAVKI
FIIHNMGIEFIQSPPFNLQASFNDSSRIIPLVFILSPGSDPMDNILMFAQENGMYDKCKS
ISLGQGQGPRAEKLIEEGTRFGHWIILQNCHVAESWMSELERISMDSQYIEANAHLNFRL
WITSYPVKTFPVSVLQNSVKMTNEAPKGLRNNMLRSYNSDPLYDEDFYKLSVLNEEVSKL
WLRGIFSLVFFHAVIQERRDFGALGWNILYEFNESDLKISLIQLKMFIEQYGKIPFQGHT
YLTGECNYGGRVTDDKDRRLLMSLLKRIYNKDATETDDFQLSKLDSYRIPLIPTRNNSIE
YIMSLPLTTSPEVFGLHDNADIMKNFNETNNLIQGVFMTQTMLISSSREPSHQNIQEIVV
DPVFDICMNILKSLPDTFDEELAARKYPIEYTNSMNTVLRQELIRFNNLLEFIKVSLNDT
KRAILGQIAMIPELESVHRSMSLGTIPESWSKKSYPSLKPLGSYINDFLSRIAFLQKWLE
EGEPNVYWISGFYFTQCFLTGVLQNHSRKNNFPIDNLRMKFDVTDFEVSTQESVEFGVFI
GGLFLEGCRWNRQFHVLDESFPRVLFDTLPVITMTPTMKTEDNQYDDEKKYECPIYKTIE
RRGILSTTGHSSNFVMFIQLNTEKNQNHWINRGAASILSLND

Protein features from InterProScan

Transcript Database ID Name Start End E.value
44 g11748.t1 CDD cd00009 AAA 2152 2288 5.49178E-5
43 g11748.t1 Coils Coil Coil 181 201 -
40 g11748.t1 Coils Coil Coil 271 291 -
41 g11748.t1 Coils Coil Coil 906 929 -
39 g11748.t1 Coils Coil Coil 1026 1046 -
38 g11748.t1 Coils Coil Coil 3017 3079 -
42 g11748.t1 Coils Coil Coil 4240 4242 -
22 g11748.t1 Gene3D G3DSA:1.20.140.100 - 1098 1263 1.6E-52
23 g11748.t1 Gene3D G3DSA:3.20.180.20 - 1264 1362 3.7E-29
37 g11748.t1 Gene3D G3DSA:1.20.58.1120 - 1363 1504 2.8E-43
33 g11748.t1 Gene3D G3DSA:3.40.50.300 - 1505 1655 1.8E-71
29 g11748.t1 Gene3D G3DSA:1.10.8.710 - 1656 1764 1.8E-36
32 g11748.t1 Gene3D G3DSA:3.40.50.300 - 1766 2034 4.1E-84
31 g11748.t1 Gene3D G3DSA:3.40.50.300 - 2130 2674 2.0E-183
25 g11748.t1 Gene3D G3DSA:1.20.920.30 - 2298 2508 2.0E-183
26 g11748.t1 Gene3D G3DSA:1.20.920.20 - 2678 3138 2.9E-118
27 g11748.t1 Gene3D G3DSA:1.20.920.20 - 2762 3114 2.9E-118
35 g11748.t1 Gene3D G3DSA:3.40.50.11510 - 3153 3317 1.8E-66
28 g11748.t1 Gene3D G3DSA:1.20.920.20 - 3318 3398 7.3E-11
36 g11748.t1 Gene3D G3DSA:1.10.8.1220 - 3402 3492 4.1E-19
30 g11748.t1 Gene3D G3DSA:3.40.50.300 - 3616 3743 1.0E-35
34 g11748.t1 Gene3D G3DSA:1.10.8.720 - 3744 3917 1.8E-48
24 g11748.t1 Gene3D G3DSA:1.20.1270.280 - 3932 4093 2.0E-12
21 g11748.t1 Gene3D G3DSA:3.10.490.20 - 4096 4241 1.0E-6
13 g11748.t1 PANTHER PTHR10676:SF242 DYNEIN HEAVY CHAIN 3, AXONEMAL 95 4239 0.0
14 g11748.t1 PANTHER PTHR10676 DYNEIN HEAVY CHAIN FAMILY PROTEIN 95 4239 0.0
6 g11748.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 989 1095 1.4E-17
5 g11748.t1 Pfam PF08393 Dynein heavy chain, N-terminal region 2 1095 1357 3.6E-99
3 g11748.t1 Pfam PF12774 Hydrolytic ATP binding site of dynein motor region 1490 1816 2.5E-153
10 g11748.t1 Pfam PF17852 Dynein heavy chain AAA lid domain 1987 2112 1.4E-12
8 g11748.t1 Pfam PF12775 P-loop containing dynein motor region 2121 2296 2.9E-61
9 g11748.t1 Pfam PF17857 AAA+ lid domain 2331 2408 1.2E-13
2 g11748.t1 Pfam PF12780 P-loop containing dynein motor region D4 2487 2775 5.8E-94
1 g11748.t1 Pfam PF12777 Microtubule-binding stalk of dynein motor 2789 3131 2.8E-53
4 g11748.t1 Pfam PF12781 ATP-binding dynein motor region 3160 3381 9.9E-84
12 g11748.t1 Pfam PF03028 Dynein heavy chain region D6 P-loop domain 3628 3742 2.0E-41
11 g11748.t1 Pfam PF18198 Dynein heavy chain AAA lid domain 3775 3920 9.3E-51
7 g11748.t1 Pfam PF18199 Dynein heavy chain C-terminal domain 3927 4238 6.9E-103
19 g11748.t1 SMART SM00382 AAA_5 1520 1659 0.77
20 g11748.t1 SMART SM00382 AAA_5 2149 2295 0.34
15 g11748.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1506 1725 6.91E-26
17 g11748.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1736 1954 1.42E-13
16 g11748.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2132 2407 9.19E-20
18 g11748.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2480 2778 1.82E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007018 microtubule-based movement BP
GO:0030286 dynein complex CC
GO:0005524 ATP binding MF
GO:0008569 minus-end-directed microtubule motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values