Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g11748.t1
  • List of isoforms

g11748.t1, g11748.t13

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko05014
ko05016
ko05022

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11748.t1) is OG0000087. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 6 XP_012056092.1, XP_012054320.1, XP_012058536.1, XP_012064230.1, XP_012054937.1, XP_012064519.1
Apis mellifera AMELL 10 GB49952-PA, GB55144-PA, GB55143-PA, GB41007-PA, GB42359-PA, GB50548-PA, GB45049-PA, GB42373-PA, GB43214-PA, GB40933-PA
Culicoides sonorensis CSONO 6 CSON014975-1, CSON005797-1, CSON010244-1, CSON014963-1, CSON009294-1, CSON012522-1
Polypedilum nubifer PNUBI 7 Pn.09345, Pn.00283, Pn.13345, Pn.10611, Pn.11217, Pn.10626, Pn.17197
Polypedilum vanderplanki PVAND 4 g12248.t1, g6319.t1, g11748.t1, g5058.t1
Polypedilum pembai PPEMB 4 g1382.t1, g7180.t1, g3468.t1, g13083.t1
Belgica antarctica BANTA 4 IU25_07000-mRNA-1, IU25_05268-mRNA-1, IU25_06553-mRNA-1, IU25_08759-mRNA-1
Clunio marinus CMARI 4 CRK93661.1, CRK98972.1, CRK99186.1, CRK89849.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL008036-PB, AAEL023900-PA, AAEL022882-PA, AAEL000512-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS37651.1, EDS36566.1, EDS32675.1, EDS43082.1
Culex quinquefasciatus CQUIN 4 CPIJ012205-PA, CPIJ009153-PA, CPIJ002912-PA, CPIJ004695-PA
Anopheles atroparvus AATRO 5 AATE009736-PA, AATE002891-PA, AATE020153-PA, AATE007865-PA, AATE007289-PA
Anopheles sinensis china ASINEC 4 ASIC012771-PA, ASIC021532-PA, ASIC015521-PA, ASIC004676-PA
Anopheles dirus ADIRU 4 ADIR011503-PA, ADIR005316-PA, ADIR002821-PA, ADIR000232-PA
Anopheles farauti AFARA 7 AFAF012496-PA, AFAF015448-PA, AFAF009019-PA, AFAF008683-PA, AFAF019204-PA, AFAF018541-PA, AFAF001778-PA
Anopheles epiroticus AEPIR 4 AEPI005205-PA, AEPI007474-PA, AEPI003549-PA, AEPI004135-PA
Anopheles christyi ACHRI 5 ACHR003878-PA, ACHR002184-PA, ACHR000185-PA, ACHR004174-PA, ACHR002926-PA
Anopheles merus AMERU 5 AMEM000828-PA, AMEM000113-PA, AMEM005399-PA, AMEM010975-PA, AMEM016916-PA
Anopheles melas AMELA 4 AMEC016532-PA, AMEC002163-PA, AMEC002891-PA, AMEC012998-PA
Anopheles arabiensis AARAB 4 AARA006936-PA, AARA001319-PA, AARA002861-PA, AARA011814-PA
Anopheles coluzzii ACOLU 5 ACOM028973-PA, ACOM035707-PA, ACOM023495-PA, ACOM041523-PA, ACOM032538-PA
Anopheles coluzzii ngousso ACOLUN 4 ACON002009-PA, ACON003226-PA, ACON011441-PA, ACON009568-PA
Anopheles gambiae AGAMB 4 AGAP011441-PA, AGAP003226-PA, AGAP009568-PA, AGAP002009-PA
Anopheles quadriannulatus AQUAD 4 AQUA007469-PA, AQUA008069-PA, AQUA007561-PA, AQUA007111-PA
Anopheles minimus AMINI 4 AMIN008988-PA, AMIN000401-PA, AMIN003318-PA, AMIN009871-PA
Anopheles culicifacies ACULI 4 ACUA025058-PA, ACUA007911-PA, ACUA012879-PA, ACUA006188-PA
Anopheles funestus AFUNE 3 AFUN016331-PA, AFUN006188-PA, AFUN004902-PA
Anopheles stephensi indian ASTEPI 4 ASTEI06460-PA, ASTEI03779-PA, ASTEI09519-PA, ASTEI00353-PA
Anopheles stephensi ASTEP 4 ASTE007060-PA, ASTE004630-PA, ASTE009306-PA, ASTE010753-PA
Anopheles albimanus AALBI 5 AALB009530-PA, AALB001344-PA, AALB000501-PA, AALB009802-PA, AALB007139-PA
Anopheles darlingi ADARL 3 ADAC010246-PA, ADAC008823-PA, ADAC005348-PA
Drosophila willistoni DWILL 6 FBpp0374274, FBpp0376492, FBpp0374107, FBpp0254221, FBpp0377351, FBpp0379685
Drosophila pseudoobscura DPSEU 4 FBpp0331921, FBpp0272032, FBpp0333952, FBpp0286564
Drosophila persimilis DPERS 6 FBpp0184736, FBpp0179048, FBpp0182026, FBpp0179049, FBpp0179046, FBpp0178618
Drosophila ananassae DANAN 6 FBpp0347222, FBpp0343326, FBpp0349940, FBpp0350836, FBpp0350737, FBpp0342613
Drosophila melanogaster DMELA 5 FBpp0312333, FBpp0288420, FBpp0074283, FBpp0293284, FBpp0292225
Drosophila sechellia DSECH 7 FBpp0196159, FBpp0195649, FBpp0204350, FBpp0201226, FBpp0196160, FBpp0204351, FBpp0198723
Drosophila simulans DSIMU 4 FBpp0325553, FBpp0319678, FBpp0314092, FBpp0326942
Drosophila erecta DEREC 5 FBpp0371203, FBpp0368563, FBpp0368426, FBpp0137691, FBpp0365874
Drosophila yakuba DYAKU 5 FBpp0361449, FBpp0355705, FBpp0355532, FBpp0358629, FBpp0357549
Drosophila virilis DVIRI 4 FBpp0397862, FBpp0231004, FBpp0397913, FBpp0394690
Drosophila mojavensis DMOJA 6 FBpp0385981, FBpp0163897, FBpp0388760, FBpp0387531, FBpp0387994, FBpp0388018
Drosophila grimshawi DGRIM 5 FBpp0404574, FBpp0412013, FBpp0408503, FBpp0404823, FBpp0412167
Lucilia cuprina LCUPR 7 KNC33880, KNC27084, KNC21130, KNC25864, KNC31762, KNC27083, KNC31076
Musca domestica MDOME 5 MDOA009070-PA, MDOA008120-PA, MDOA005907-PA, MDOA012504-PA, MDOA005909-PB
Stomoxys calcitrans SCALC 6 SCAU007321-PA, SCAU003454-PA, SCAU005862-PA, SCAU002318-PA, SCAU010052-PA, SCAU004420-PA
Glossina brevipalpis GBREV 12 GBRI032726-PA, GBRI024715-PA, GBRI023864-PA, GBRI007823-PA, GBRI039134-PA, GBRI039135-PA, GBRI000373-PA, GBRI023861-PA, GBRI000374-PA, GBRI005645-PA, GBRI007825-PA, GBRI017688-PA
Glossina palpalis GPALP 6 GPPI012338-PA, GPPI012231-PA, GPPI038318-PA, GPPI038316-PA, GPPI027006-PA, GPPI014651-PA
Glossina austeni GAUST 10 GAUT020487-PA, GAUT041803-PA, GAUT031139-PA, GAUT027617-PA, GAUT046627-PA, GAUT009367-PA, GAUT009385-PA, GAUT000979-PA, GAUT031138-PA, GAUT031140-PA
Glossina pallidipes GPALL 10 GPAI047958-PA, GPAI047971-PA, GPAI047957-PA, GPAI035073-PA, GPAI012441-PA, GPAI047970-PA, GPAI025418-PA, GPAI025423-PA, GPAI046760-PA, GPAI035069-PA
Glossina morsitans GMORS 9 GMOY002721-PA, GMOY005026-PA, GMOY002144-PA, GMOY000188-PA, GMOY006836-PA, GMOY001086-PA, GMOY009256-PA, GMOY007918-PA, GMOY009892-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11748.t1) is OG0000107. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN21762_c0_g2_i6.p1, TRINITY_DN14408_c0_g1_i4.p1, TRINITY_DN32064_c0_g1_i1.p1, TRINITY_DN6383_c0_g1_i9.p1, TRINITY_DN38389_c0_g1_i3.p1, TRINITY_DN16366_c0_g1_i9.p1
Parochlus steinenii PSTEI PSG05484, PSG05893, PSG05541, PSG11623, PSG09157, PSG04970, PSG05895, PSG10789, PSG01731, PSG09156, PSG05929
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN10589_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN396_c0_g10_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN62318_c0_g1_i1.p1, TRINITY_DN72168_c0_g1_i1.p1, TRINITY_DN16810_c0_g1_i1.p1, TRINITY_DN12503_c0_g1_i2.p1, TRINITY_DN10164_c1_g1_i1.p1, TRINITY_DN74988_c0_g1_i1.p1, TRINITY_DN21883_c0_g1_i1.p1, TRINITY_DN36112_c0_g1_i1.p1, TRINITY_DN8015_c0_g1_i1.p1, TRINITY_DN58100_c0_g1_i1.p1, TRINITY_DN101440_c0_g1_i1.p1, TRINITY_DN18808_c0_g1_i1.p1, TRINITY_DN23707_c0_g1_i1.p1, TRINITY_DN34323_c0_g1_i1.p1, TRINITY_DN19779_c0_g1_i1.p1
Clunio marinus CMARI CRK93661.1, CRK87169.1, CRK99186.1, CRK98135.1, CRK89849.1, CRK98041.1, CRL07346.1, CRK98972.1, CRK97522.1
Cardiocladius sp CARDI none
Belgica antarctica BANTA IU25_07000-mRNA-1, IU25_05268-mRNA-1, IU25_04678-mRNA-1, IU25_04677-mRNA-1, IU25_01639-mRNA-1, IU25_05256-mRNA-1, IU25_01408-mRNA-1, IU25_06553-mRNA-1, IU25_08759-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN5173_c0_g1_i3.p1, TRINITY_DN33682_c0_g1_i2.p1
Chironomus riparius CRIPA g17330.t1, g2394.t1, g8659.t1, g13443.t1, g972.t1, g4767.t1, g4139.t1, g8255.t1, g5828.t1
Chironomus columbiensis CCOLU TRINITY_DN19751_c0_g2_i2.p1, TRINITY_DN37575_c0_g2_i1.p1, TRINITY_DN14068_c0_g1_i1.p1, TRINITY_DN32467_c0_g1_i1.p1, TRINITY_DN15858_c0_g1_i2.p1
Chironomus tentans CTENT g10444.t1, g11047.t1, g1957.t1, g2776.t1, g3348.t1, g1888.t1, g2452.t1, g9280.t1, g231.t1, g13496.t1
Chironomus dilutus CDILU TRINITY_DN18518_c0_g1_i1.p1, TRINITY_DN35905_c0_g1_i1.p1, TRINITY_DN24583_c0_g1_i1.p1, TRINITY_DN14622_c0_g1_i1.p1, TRINITY_DN10957_c0_g1_i4.p1, TRINITY_DN10611_c0_g1_i11.p1, TRINITY_DN4454_c0_g1_i1.p1, TRINITY_DN14622_c0_g2_i1.p1, TRINITY_DN17237_c0_g2_i1.p1
Polypedilum nubifer PNUBI Pn.02619, Pn.01029, Pn.00283, Pn.15810, Pn.09345, Pn.08714, Pn.10611, Pn.10626
Polypedilum vanderplanki PVAND g9449.t1, g11350.t1, g5058.t1, g1029.t1, g5598.t1, g12248.t1, g6319.t1, g11354.t1, g10500.t1, g11748.t1
Polypedilum pembai PPEMB g7646.t1, g1382.t1, g3468.t1, g13083.t1, g1057.t1, g3172.t1, g10176.t1, g8298.t1, g1056.t1, g7180.t1
Culicoides sonorensis CSONO CSON014975-1, CSON005797-1, CSON014963-1, CSON013084-1, CSON011058-1, CSON013031-1, CSON008922-1, CSON010244-1, CSON001724-1, CSON013621-1, CSON009294-1, CSON000082-1, CSON012522-1
Aedes aegypti lvpagwg AAEGYL AAEL008036-PB, AAEL023900-PA, AAEL022731-PA, AAEL023884-PA, AAEL000512-PA, AAEL027664-PA, AAEL026881-PA, AAEL007911-PC, AAEL009881-PA, AAEL022882-PA, AAEL007225-PB
Anopheles gambiae AGAMB AGAP011441-PA, AGAP003226-PA, AGAP001660-PA, AGAP003271-PA, AGAP002009-PA, AGAP009568-PA, AGAP010435-PA, AGAP001672-PA, AGAP007675-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation