General information for g11879
Yuki Yoshida
22/1/2022
Gene loci information
This gene g11879 is located on chr_1: 18945276..18946630 (- strand)
This has not been named
Isoforms of this gene
- There are 7 isoforms that are expressed from this gene.
- The longest transcript is g11879.t1
- List of isoforms
g11879.t1, g11879.t4, g11879.t5, g11879.t6, g11879.t7, g11879.t10, g11879.t11
The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.
KEGG
Orthology
- This gene has been annotated with K04392 (Ras-related C3 botulinum toxin substrate 1)
Pathway
- This gene belongs to the following 1 pathways
ko04010
ko04013
ko04014
ko04015
ko04024
ko04062
ko04071
ko04145
ko04151
ko04310
ko04360
ko04361
ko04370
ko04380
ko04510
ko04520
ko04530
ko04613
ko04620
ko04650
ko04662
ko04664
ko04666
ko04670
ko04722
ko04810
ko04932
ko04933
ko04972
ko05014
ko05020
ko05022
ko05100
ko05120
ko05130
ko05131
ko05132
ko05135
ko05163
ko05167
ko05169
ko05170
ko05200
ko05203
ko05205
ko05208
ko05210
ko05211
ko05212
ko05231
ko05415
ko05416
ko05417
ko05418
This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.
Gene conservation patterns
Diptera wide analysis
The Orthogroup for the longest transcript (g11879.t1) is OG0004750. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.
Conservation
| Organism | Abb. ID | No. Orthologs | Ortholog ID |
|---|---|---|---|
| Atta cephalotes | ACEPH | 1 | XP_012058059.1 |
| Apis mellifera | AMELL | 1 | GB45431-PA |
| Culicoides sonorensis | CSONO | 3 | CSON015063-1, CSON011705-1, CSON011591-1 |
| Polypedilum nubifer | PNUBI | 1 | Pn.08392 |
| Polypedilum vanderplanki | PVAND | 1 | g11879.t1 |
| Polypedilum pembai | PPEMB | 1 | g12153.t1 |
| Belgica antarctica | BANTA | 1 | IU25_07577-mRNA-1 |
| Clunio marinus | CMARI | 0 | none |
| Aedes aegypti lvpagwg | AAEGYL | 1 | AAEL006786-PD |
| Culex quinquefasciatus quinquefasciatus | CQUINQ | 1 | EDS31800.1 |
| Culex quinquefasciatus | CQUIN | 1 | CPIJ001400-PA |
| Anopheles atroparvus | AATRO | 1 | AATE013437-PA |
| Anopheles sinensis china | ASINEC | 2 | ASIC002421-PA, ASIC002420-PA |
| Anopheles dirus | ADIRU | 1 | ADIR003302-PA |
| Anopheles farauti | AFARA | 1 | AFAF021662-PA |
| Anopheles epiroticus | AEPIR | 1 | AEPI001286-PA |
| Anopheles christyi | ACHRI | 1 | ACHR003486-PA |
| Anopheles merus | AMERU | 0 | none |
| Anopheles melas | AMELA | 1 | AMEC004327-PA |
| Anopheles arabiensis | AARAB | 1 | AARA001204-PA |
| Anopheles coluzzii | ACOLU | 1 | ACOM042667-PA |
| Anopheles coluzzii ngousso | ACOLUN | 1 | ACON003092-PA |
| Anopheles gambiae | AGAMB | 1 | AGAP003092-PA |
| Anopheles quadriannulatus | AQUAD | 1 | AQUA016251-PA |
| Anopheles minimus | AMINI | 1 | AMIN003796-PA |
| Anopheles culicifacies | ACULI | 1 | ACUA020300-PA |
| Anopheles funestus | AFUNE | 2 | AFUN019583-PA, AFUN010934-PA |
| Anopheles stephensi indian | ASTEPI | 1 | ASTEI00274-PA |
| Anopheles stephensi | ASTEP | 1 | ASTE009960-PA |
| Anopheles albimanus | AALBI | 1 | AALB007125-PA |
| Anopheles darlingi | ADARL | 1 | ADAC008618-PA |
| Drosophila willistoni | DWILL | 1 | FBpp0243445 |
| Drosophila pseudoobscura | DPSEU | 1 | FBpp0284492 |
| Drosophila persimilis | DPERS | 1 | FBpp0186336 |
| Drosophila ananassae | DANAN | 1 | FBpp0119251 |
| Drosophila melanogaster | DMELA | 1 | FBpp0293883 |
| Drosophila sechellia | DSECH | 1 | FBpp0207731 |
| Drosophila simulans | DSIMU | 1 | FBpp0219195 |
| Drosophila erecta | DEREC | 1 | FBpp0135915 |
| Drosophila yakuba | DYAKU | 1 | FBpp0269783 |
| Drosophila virilis | DVIRI | 1 | FBpp0238264 |
| Drosophila mojavensis | DMOJA | 1 | FBpp0171818 |
| Drosophila grimshawi | DGRIM | 1 | FBpp0153304 |
| Lucilia cuprina | LCUPR | 0 | none |
| Musca domestica | MDOME | 1 | MDOA005446-PA |
| Stomoxys calcitrans | SCALC | 1 | SCAU013955-PA |
| Glossina brevipalpis | GBREV | 1 | GBRI041725-PA |
| Glossina palpalis | GPALP | 1 | GPPI014065-PA |
| Glossina austeni | GAUST | 1 | GAUT006059-PA |
| Glossina pallidipes | GPALL | 1 | GPAI015082-PA |
| Glossina morsitans | GMORS | 1 | GMOY011338-PA |
Gene tree
Chironomidae-wide analysis
The Orthogroup for the longest transcript (g11879.t1) is OG0005820. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]
Conservation
| Organism | Abb. ID | Ortholog ID |
|---|---|---|
| Podonomus sp | PODON | none |
| Parochlus steinenii | PSTEI | PSG05239 |
| Trissopelopia nemorum | TNEMO | TRINITY_DN28855_c0_g1_i1.p1, TRINITY_DN27929_c0_g1_i1.p1, TRINITY_DN2606_c0_g4_i1.p1 |
| Paraheptagyia tonnoiri | PTONN | none |
| Telmatogeton pecinata | TPECI | TRINITY_DN1371_c0_g1_i6.p1, TRINITY_DN0_c1565_g1_i1.p1 |
| Cricotopus draysoni | CDRAY | TRINITY_DN5087_c0_g1_i3.p1 |
| Clunio marinus | CMARI | none |
| Cardiocladius sp | CARDI | TRINITY_DN3869_c0_g1_i14.p1 |
| Belgica antarctica | BANTA | IU25_07577-mRNA-1 |
| Kiefferophyes invenustulus | KINVE | TRINITY_DN5956_c0_g1_i11.p1, TRINITY_DN77_c0_g3_i2.p1, TRINITY_DN282796_c0_g1_i1.p1, TRINITY_DN77_c0_g2_i3.p1 |
| Chironomus riparius | CRIPA | g9194.t1 |
| Chironomus columbiensis | CCOLU | TRINITY_DN9581_c0_g1_i6.p1 |
| Chironomus tentans | CTENT | g8098.t1 |
| Chironomus dilutus | CDILU | TRINITY_DN2040_c0_g1_i2.p1 |
| Polypedilum nubifer | PNUBI | Pn.08392 |
| Polypedilum vanderplanki | PVAND | g11879.t1 |
| Polypedilum pembai | PPEMB | g12153.t1 |
| Culicoides sonorensis | CSONO | CSON015063-1, CSON011705-1, CSON011591-1 |
| Aedes aegypti lvpagwg | AAEGYL | AAEL006786-PD |
| Anopheles gambiae | AGAMB | AGAP003092-PA |
Gene tree
Expression profile for this gene
Gene-level expression profile
Raw TPM values
Expression profile of isoforms
A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation
