General information for g12728.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aldo-keto reductase family 1 member B1.
Parent gene
- The parent gene g12728 is located on chr_1: 25507881..25508906 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12728 | g12728.t4 | isoform | g12728.t4 | 25507377 | 25508198 |
| chr_1 | g12728 | g12728.t4 | exon | g12728.t4.exon1 | 25507377 | 25507678 |
| chr_1 | g12728 | g12728.t4 | TTS | g12728.t4 | 25507381 | 25507381 |
| chr_1 | g12728 | g12728.t4 | cds | g12728.t4.CDS1 | 25507597 | 25507678 |
| chr_1 | g12728 | g12728.t4 | exon | g12728.t4.exon2 | 25507867 | 25508198 |
| chr_1 | g12728 | g12728.t4 | cds | g12728.t4.CDS2 | 25507867 | 25508153 |
| chr_1 | g12728 | g12728.t4 | TSS | g12728.t4 | 25508972 | 25508972 |
Sequences
>g12728.t4 Gene=g12728 Length=634
CATACATTGAAACAATTAAATTTAGATTATCTTGACTTGTACCTCATGCATTGGCCTATT
TGTTATCAAAAATCAACTGAATTGTTCCCAAAGAATGAAGCTGGTGAAATTTTGCACGCT
AATTTTGATATTCTTGACACTTATCGTGCAATGGAGGAACTTGTTGATGCTGGATTGACT
AAAAGTATTGGAATTTCAAACTTCAATATCAAACAAGTTGAGTACATTACTAAAAATGCT
CGCATCCAACCAGTCACCAATCAAGTTGAATGCAATCCATATTTACTTAATAAAGAATTA
AGTGATTTCTGCAAAAGTAAAAACATTGTCATCACAAATTTTAATCCGTTACCAAATTCA
ACGCGGTCACGTTGTCATACCGAAATCAGTTACGAAGGATCGCATAATCAGTAATTTTGA
TGTTTTCAACTTCACATTGAGCGATTCTGAAATAAAAGATTTGGAAAACTTCAACTATAC
TGAGCGCATTTGTAGCATGTCTCAAGATAAACATCATCCAGCTTATCCTTTCAATGACGA
CGCCTAAAAAATGCACCGCCTGCCTCTTTTTTGATTGTCTGATTATCAAAAAAATGAAAT
AAATGTGGAACACACAGTTTCTTTTCAAATAAAA
>g12728.t4 Gene=g12728 Length=122
MHWPICYQKSTELFPKNEAGEILHANFDILDTYRAMEELVDAGLTKSIGISNFNIKQVEY
ITKNARIQPVTNQVECNPYLLNKELSDFCKSKNIVITNFNPLPNSTRSRCHTEISYEGSH
NQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12728.t4 | Gene3D | G3DSA:3.20.20.100 | - | 1 | 118 | 2.3E-37 |
| 2 | g12728.t4 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 1 | 111 | 3.5E-31 |
| 3 | g12728.t4 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 1 | 111 | 3.5E-31 |
| 4 | g12728.t4 | PRINTS | PR00069 | Aldo-keto reductase signature | 36 | 53 | 2.0E-18 |
| 5 | g12728.t4 | PRINTS | PR00069 | Aldo-keto reductase signature | 70 | 99 | 2.0E-18 |
| 1 | g12728.t4 | Pfam | PF00248 | Aldo/keto reductase family | 2 | 113 | 5.8E-18 |
| 7 | g12728.t4 | ProSitePatterns | PS00062 | Aldo/keto reductase family signature 2. | 36 | 53 | - |
| 6 | g12728.t4 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 1 | 107 | 7.33E-28 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
