General information for g12728
Yuki Yoshida
22/1/2022
Gene loci information
This gene g12728 is located on chr_1: 25507881..25508906 (- strand)
This has not been named
Isoforms of this gene
- There are 30 isoforms that are expressed from this gene.
- The longest transcript is g12728.t11
- List of isoforms
g12728.t1, g12728.t2, g12728.t3, g12728.t4, g12728.t5, g12728.t6, g12728.t7, g12728.t8, g12728.t9, g12728.t10, g12728.t11, g12728.t12, g12728.t13, g12728.t14, g12728.t15, g12728.t16, g12728.t17, g12728.t18, g12728.t19, g12728.t20, g12728.t21, g12728.t22, g12728.t23, g12728.t24, g12728.t25, g12728.t26, g12728.t27, g12728.t28, g12728.t29, g12728.t30
The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.
KEGG
Orthology
- This gene has been annotated with K00002 (alcohol dehydrogenase (NADP+)) or K00011 (aldehyde reductase) or K17743 (D-xylose reductase)
Pathway
- This gene belongs to the following 3 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object lengthko00010
ko00040
ko00053
ko00561
ko00620
ko00930
ko01100
ko01110
ko01120
ko01220
ko01240
ko05208
ko00040
ko00051
ko00052
ko00561
ko00790
ko01100
ko00040
ko01100
This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.
Gene conservation patterns
Diptera wide analysis
The Orthogroup for the longest transcript (g12728.t11) is OG0000075. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.
Conservation
Gene tree
Chironomidae-wide analysis
The Orthogroup for the longest transcript (g12728.t11) is OG0000191. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]
Conservation
| Organism | Abb. ID | Ortholog ID |
|---|---|---|
| Podonomus sp | PODON | TRINITY_DN13477_c0_g1_i5.p1, TRINITY_DN63162_c0_g1_i1.p1, TRINITY_DN12636_c0_g1_i7.p1 |
| Parochlus steinenii | PSTEI | PSG02335, PSG02333, PSG02334, PSG02449 |
| Trissopelopia nemorum | TNEMO | TRINITY_DN2853_c0_g1_i2.p1, TRINITY_DN7798_c0_g1_i3.p1, TRINITY_DN6711_c0_g1_i4.p1, TRINITY_DN878_c0_g1_i10.p1, TRINITY_DN32672_c0_g1_i3.p1, TRINITY_DN720_c0_g1_i2.p1 |
| Paraheptagyia tonnoiri | PTONN | TRINITY_DN2000_c0_g2_i1.p1, TRINITY_DN4145_c0_g1_i4.p1 |
| Telmatogeton pecinata | TPECI | TRINITY_DN96_c0_g1_i2.p1, TRINITY_DN2985_c0_g1_i12.p1, TRINITY_DN75083_c0_g1_i1.p1 |
| Cricotopus draysoni | CDRAY | TRINITY_DN3253_c0_g1_i1.p1, TRINITY_DN1940_c0_g1_i1.p1, TRINITY_DN65512_c0_g1_i1.p1, TRINITY_DN21985_c0_g1_i1.p1, TRINITY_DN106071_c0_g1_i1.p1, TRINITY_DN26068_c0_g1_i1.p1, TRINITY_DN2479_c0_g1_i5.p1, TRINITY_DN75040_c0_g1_i1.p1, TRINITY_DN3574_c0_g1_i1.p1, TRINITY_DN29338_c0_g1_i1.p1 |
| Clunio marinus | CMARI | CRL07545.1, CRL05748.1, CRL00278.1, CRK95489.1, CRK95493.1, CRK87640.1 |
| Cardiocladius sp | CARDI | TRINITY_DN3444_c0_g1_i3.p1, TRINITY_DN1025_c0_g1_i1.p1 |
| Belgica antarctica | BANTA | IU25_08659-mRNA-1, IU25_08096-mRNA-1, IU25_07391-mRNA-1, IU25_01866-mRNA-1 |
| Kiefferophyes invenustulus | KINVE | TRINITY_DN206951_c0_g1_i1.p1, TRINITY_DN21653_c0_g1_i1.p1, TRINITY_DN20219_c0_g2_i1.p1, TRINITY_DN55712_c0_g1_i3.p1, TRINITY_DN3296_c1_g1_i1.p1, TRINITY_DN47150_c0_g1_i2.p1, TRINITY_DN20297_c0_g1_i1.p1, TRINITY_DN7532_c0_g1_i2.p1, TRINITY_DN72174_c0_g1_i1.p1, TRINITY_DN27040_c1_g1_i5.p1, TRINITY_DN7955_c0_g1_i1.p1, TRINITY_DN6980_c0_g1_i3.p1, TRINITY_DN26363_c0_g1_i3.p1, TRINITY_DN6980_c0_g2_i4.p2, TRINITY_DN187770_c0_g1_i1.p1 |
| Chironomus riparius | CRIPA | g2375.t1, g10345.t1, g1371.t1, g5177.t1, g16277.t1 |
| Chironomus columbiensis | CCOLU | TRINITY_DN2790_c0_g1_i5.p1, TRINITY_DN12394_c0_g1_i3.p1, TRINITY_DN7663_c0_g1_i4.p1, TRINITY_DN14668_c0_g1_i1.p1, TRINITY_DN917_c0_g1_i3.p1, TRINITY_DN1720_c0_g1_i7.p1 |
| Chironomus tentans | CTENT | g12212.t1, g11628.t1, g6920.t1, g5184.t1, g14446.t1, g17155.t1, g12211.t1, g13581.t1, g14445.t1 |
| Chironomus dilutus | CDILU | TRINITY_DN320_c0_g2_i7.p1, TRINITY_DN320_c0_g1_i1.p1, TRINITY_DN2538_c0_g2_i1.p1, TRINITY_DN2004_c1_g1_i1.p1 |
| Polypedilum nubifer | PNUBI | Pn.04133, Pn.16415, Pn.10572, Pn.05096 |
| Polypedilum vanderplanki | PVAND | g1988.t1, g12730.t1, g6172.t1, g15759.t1, g12733.t1, g12729.t1, g12728.t11, g7712.t1, g12734.t1 |
| Polypedilum pembai | PPEMB | g14802.t1, g14801.t1, g7271.t1, g1299.t1, g7270.t1 |
| Culicoides sonorensis | CSONO | CSON005663-1, CSON005706-2, CSON005660-1 |
| Aedes aegypti lvpagwg | AAEGYL | AAEL004102-PA, AAEL004086-PB, AAEL004118-PA, AAEL004095-PA, AAEL004088-PH, AAEL004096-PA |
| Anopheles gambiae | AGAMB | AGAP012851-PA, AGAP029733-PA, AGAP029732-PA, AGAP011050-PA, AGAP011066-PA, AGAP011068-PA, AGAP011053-PA, AGAP011051-PA |
Gene tree
Expression profile for this gene
Gene-level expression profile
Raw TPM values
Expression profile of isoforms
A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation
