General information for g12732.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12732 is located on chr_1: 25514986..25515384 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12732 | g12732.t1 | isoform | g12732.t1 | 25514986 | 25515384 |
| chr_1 | g12732 | g12732.t1 | exon | g12732.t1.exon1 | 25514986 | 25515384 |
| chr_1 | g12732 | g12732.t1 | cds | g12732.t1.CDS1 | 25514986 | 25515384 |
| chr_1 | g12732 | g12732.t1 | TSS | g12732.t1 | NA | NA |
| chr_1 | g12732 | g12732.t1 | TTS | g12732.t1 | NA | NA |
Sequences
>g12732.t1 Gene=g12732 Length=399
ATGACTTCAAGAAGCGGCATTATTATTCCTCCATTAAAATCTGAATCACGAGTTCTTTTA
ATCAAAGCTGGATACTCAGCATATTTTACAACTTTTCGTCTAAAAAATAAATTTTTAAAC
TTTTTTAATGGAAAATTTNCGAAATTATTAGAAATCGCCGAAAAGCACAAAAAGACACCA
GCACAAGTTTTAATTCGATTCCAAATTCAGCTTGGTCATGTTGCCATTCCTAAGTCAGTC
ACAAAGGATCGCATAATCAGCAATTTTGATGTCTTTAACTTTACTTTGAGTGACAGTGAC
ATGAATGATTTGCAAAGCTTTGGACATGTTGAACGTGTAATCACAATGTCTCGTGATAAG
GATCATCCAAATTATCCCTTTAATGATGAAGAAGCTTGA
>g12732.t1 Gene=g12732 Length=132
MTSRSGIIIPPLKSESRVLLIKAGYSAYFTTFRLKNKFLNFFNGKFXKLLEIAEKHKKTP
AQVLIRFQIQLGHVAIPKSVTKDRIISNFDVFNFTLSDSDMNDLQSFGHVERVITMSRDK
DHPNYPFNDEEA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12732.t1 | Gene3D | G3DSA:3.20.20.100 | - | 30 | 131 | 7.4E-27 |
| 2 | g12732.t1 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 48 | 128 | 2.3E-20 |
| 3 | g12732.t1 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 48 | 128 | 2.3E-20 |
| 1 | g12732.t1 | Pfam | PF00248 | Aldo/keto reductase family | 47 | 106 | 1.0E-8 |
| 5 | g12732.t1 | ProSitePatterns | PS00063 | Aldo/keto reductase family putative active site signature. | 76 | 91 | - |
| 4 | g12732.t1 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 43 | 119 | 7.46E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
