Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g12732.t1
  • List of isoforms

g12732.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g12732.t1) is OG0000075. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012063195.1, XP_012062916.1
Apis mellifera AMELL 3 GB50596-PA, GB50595-PA, GB50598-PA
Culicoides sonorensis CSONO 5 CSON005663-1, CSON005662-1, CSON005707-2, CSON005706-2, CSON005660-1
Polypedilum nubifer PNUBI 3 Pn.04133, Pn.16415, Pn.10572
Polypedilum vanderplanki PVAND 11 g1988.t1, g12730.t1, g6172.t1, g15759.t1, g12733.t1, g12729.t1, g12731.t1, g12728.t11, g12732.t1, g7712.t1, g12734.t1
Polypedilum pembai PPEMB 5 g14802.t1, g14801.t1, g7271.t1, g1299.t1, g7270.t1
Belgica antarctica BANTA 4 IU25_08659-mRNA-1, IU25_08096-mRNA-1, IU25_07391-mRNA-1, IU25_01866-mRNA-1
Clunio marinus CMARI 6 CRL07545.1, CRL05748.1, CRL00278.1, CRK95489.1, CRK95493.1, CRK87640.1
Aedes aegypti lvpagwg AAEGYL 6 AAEL004102-PA, AAEL004086-PB, AAEL004118-PA, AAEL004095-PA, AAEL004088-PH, AAEL004096-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 9 EDS38470.1, EDS38466.1, EDS38469.1, EDS38467.1, EDS38447.1, EDS38468.1, EDS38464.1, EDS38465.1, EDS29108.1
Culex quinquefasciatus CQUIN 9 CPIJ003392-PA, CPIJ003394-PA, CPIJ007370-PA, CPIJ003393-PA, CPIJ003397-PA, CPIJ003391-PA, CPIJ003374-PA, CPIJ003395-PA, CPIJ003396-PA
Anopheles atroparvus AATRO 7 AATE018173-PA, AATE015646-PA, AATE007577-PA, AATE006095-PA, AATE018171-PA, AATE005729-PA, AATE008332-PA
Anopheles sinensis china ASINEC 4 ASIC015202-PA, ASIC019468-PA, ASIC015201-PA, ASIC019496-PA
Anopheles dirus ADIRU 4 ADIR002307-PA, ADIR002292-PA, ADIR002290-PA, ADIR002291-PA
Anopheles farauti AFARA 6 AFAF010606-PA, AFAF006997-PA, AFAF019731-PA, AFAF018995-PA, AFAF000811-PA, AFAF000057-PA
Anopheles epiroticus AEPIR 4 AEPI002097-PA, AEPI006322-PA, AEPI006323-PA, AEPI006324-PA
Anopheles christyi ACHRI 4 ACHR005926-PA, ACHR003309-PA, ACHR001362-PA, ACHR001361-PA
Anopheles merus AMERU 6 AMEM004942-PA, AMEM015399-PA, AMEM005154-PA, AMEM017396-PA, AMEM002293-PA, AMEM008497-PA
Anopheles melas AMELA 6 AMEC019613-PA, AMEC015470-PA, AMEC021579-PA, AMEC014712-PA, AMEC000472-PA, AMEC007193-PA
Anopheles arabiensis AARAB 6 AARA018331-PA, AARA018329-PA, AARA005486-PA, AARA005484-PA, AARA018330-PA, AARA005500-PA
Anopheles coluzzii ACOLU 5 ACOM023004-PA, ACOM023008-PA, ACOM023031-PA, ACOM023009-PA, ACOM023010-PA
Anopheles coluzzii ngousso ACOLUN 7 ACON029732-PA, ACON011066-PA, ACON011053-PA, ACON011051-PA, ACON011050-PA, ACON012851-PA, ACON029733-PA
Anopheles gambiae AGAMB 8 AGAP012851-PA, AGAP029733-PA, AGAP029732-PA, AGAP011050-PA, AGAP011066-PA, AGAP011068-PA, AGAP011053-PA, AGAP011051-PA
Anopheles quadriannulatus AQUAD 4 AQUA001170-PA, AQUA001172-PA, AQUA001171-PA, AQUA001155-PA
Anopheles minimus AMINI 6 AMIN008537-PA, AMIN015635-PA, AMIN015636-PA, AMIN008535-PA, AMIN008522-PA, AMIN015634-PA
Anopheles culicifacies ACULI 6 ACUA010185-PA, ACUA012696-PA, ACUA005311-PA, ACUA024949-PA, ACUA016913-PA, ACUA006545-PA
Anopheles funestus AFUNE 6 AFUN022121-PA, AFUN009962-PA, AFUN022120-PA, AFUN004150-PA, AFUN022119-PA, AFUN009959-PA
Anopheles stephensi indian ASTEPI 4 ASTEI05820-PA, ASTEI05819-PA, ASTEI05570-PA, ASTEI05821-PA
Anopheles stephensi ASTEP 4 ASTE005410-PA, ASTE005408-PA, ASTE000933-PA, ASTE005409-PA
Anopheles albimanus AALBI 5 AALB010594-PA, AALB010354-PA, AALB010816-PA, AALB010595-PA, AALB010597-PA
Anopheles darlingi ADARL 7 ADAC006890-PA, ADAC006882-PA, ADAC006891-PA, ADAC000145-PA, ADAC007840-PA, ADAC006889-PA, ADAC006888-PA
Drosophila willistoni DWILL 7 FBpp0251296, FBpp0246158, FBpp0246156, FBpp0245837, FBpp0241353, FBpp0376331, FBpp0243779
Drosophila pseudoobscura DPSEU 5 FBpp0340951, FBpp0340803, FBpp0277144, FBpp0286554, FBpp0275403
Drosophila persimilis DPERS 5 FBpp0186914, FBpp0175083, FBpp0189056, FBpp0180307, FBpp0186915
Drosophila ananassae DANAN 7 FBpp0127723, FBpp0113441, FBpp0113442, FBpp0342118, FBpp0116982, FBpp0342897, FBpp0349433
Drosophila melanogaster DMELA 6 FBpp0073029, FBpp0088362, FBpp0075869, FBpp0075868, FBpp0085467, FBpp0073028
Drosophila sechellia DSECH 5 FBpp0195505, FBpp0206127, FBpp0195504, FBpp0206206, FBpp0206205
Drosophila simulans DSIMU 6 FBpp0211190, FBpp0318993, FBpp0208705, FBpp0211710, FBpp0211191, FBpp0211711
Drosophila erecta DEREC 7 FBpp0129347, FBpp0367607, FBpp0373661, FBpp0364888, FBpp0132782, FBpp0132781, FBpp0132449
Drosophila yakuba DYAKU 6 FBpp0265204, FBpp0362126, FBpp0269520, FBpp0265674, FBpp0265673, FBpp0265205
Drosophila virilis DVIRI 5 FBpp0225683, FBpp0234599, FBpp0230523, FBpp0392689, FBpp0228233
Drosophila mojavensis DMOJA 5 FBpp0381313, FBpp0161982, FBpp0162285, FBpp0160805, FBpp0169449
Drosophila grimshawi DGRIM 4 FBpp0149616, FBpp0154045, FBpp0411897, FBpp0150535
Lucilia cuprina LCUPR 5 KNC26675, KNC29566, KNC27877, KNC21576, KNC27853
Musca domestica MDOME 4 MDOA008843-PA, MDOA013192-PB, MDOA007082-PB, MDOA002022-PA
Stomoxys calcitrans SCALC 4 SCAU006572-PA, SCAU004239-PB, SCAU008967-PA, SCAU001969-PA
Glossina brevipalpis GBREV 13 GBRI031485-PA, GBRI031475-PA, GBRI009575-PA, GBRI009574-PA, GBRI008572-PA, GBRI018452-PA, GBRI008577-PA, GBRI009564-PA, GBRI042607-PA, GBRI009563-PA, GBRI016710-PA, GBRI016711-PA, GBRI008575-PA
Glossina palpalis GPALP 7 GPPI027101-PA, GPPI019595-PA, GPPI034679-PA, GPPI010505-PA, GPPI034678-PA, GPPI023358-PA, GPPI010502-PA
Glossina austeni GAUST 10 GAUT038104-PA, GAUT003346-PA, GAUT013389-PA, GAUT038103-PA, GAUT013392-PA, GAUT024781-PA, GAUT003345-PA, GAUT024779-PA, GAUT036143-PA, GAUT021221-PA
Glossina pallidipes GPALL 10 GPAI010229-PA, GPAI029255-PA, GPAI010227-PA, GPAI033078-PA, GPAI036017-PA, GPAI006608-PA, GPAI010228-PA, GPAI046551-PA, GPAI036020-PA, GPAI006607-PA
Glossina morsitans GMORS 7 GMOY009603-PA, GMOY006971-PA, GMOY006191-PA, GMOY002885-PA, GMOY002110-PA, GMOY002884-PA, GMOY008539-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g12732.t1) is OG0010219. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN85889_c0_g1_i1.p1
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY none
Clunio marinus CMARI none
Cardiocladius sp CARDI none
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE TRINITY_DN272271_c0_g1_i1.p1, TRINITY_DN53517_c0_g1_i1.p1, TRINITY_DN50441_c1_g1_i2.p1, TRINITY_DN239820_c0_g1_i1.p1, TRINITY_DN20219_c0_g1_i2.p1, TRINITY_DN7532_c7_g1_i1.p1, TRINITY_DN49039_c0_g2_i1.p1, TRINITY_DN49039_c0_g1_i1.p3, TRINITY_DN62194_c0_g1_i1.p1, TRINITY_DN49039_c0_g3_i1.p1
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU TRINITY_DN18717_c0_g1_i1.p1, TRINITY_DN63954_c0_g1_i1.p1, TRINITY_DN1720_c0_g2_i1.p1, TRINITY_DN5508_c0_g1_i1.p3
Chironomus tentans CTENT none
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI none
Polypedilum vanderplanki PVAND g12732.t1
Polypedilum pembai PPEMB none
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation