Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g13491.t1
  • List of isoforms

g13491.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04020
ko04080
ko04725
ko05010
ko05022
ko05033
ko05207

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13491.t1) is OG0000154. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012063608.1, XP_012057749.1
Apis mellifera AMELL 2 GB53053-PA, GB43416-PA
Culicoides sonorensis CSONO 5 CSON009240-1, CSON003587-1, CSON009239-1, CSON009230-1, CSON004536-1
Polypedilum nubifer PNUBI 4 Pn.15108, Pn.12994, Pn.15774, Pn.01121
Polypedilum vanderplanki PVAND 5 g13489.t1, g6292.t1, g6291.t1, g13491.t1, g5603.t1
Polypedilum pembai PPEMB 6 g11072.t1, g11332.t1, g1629.t1, g13076.t1, g5645.t1, g3688.t1
Belgica antarctica BANTA 2 IU25_00047-mRNA-1, IU25_06221-mRNA-1
Clunio marinus CMARI 3 CRK93806.1, CRL04701.1, CRK93341.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL018352-PB, AAEL008055-PC, AAEL007664-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS30370.1, EDS25902.1, EDS30261.1, EDS34679.1, EDS42975.1
Culex quinquefasciatus CQUIN 5 CPIJ019353-PA, CPIJ020304-PA, CPIJ017758-PA, CPIJ015652-PA, CPIJ019573-PA
Anopheles atroparvus AATRO 3 AATE005495-PA, AATE010660-PA, AATE020408-PA
Anopheles sinensis china ASINEC 3 ASIC003853-PA, ASIC021385-PA, ASIC006813-PA
Anopheles dirus ADIRU 4 ADIR010909-PA, ADIR005792-PA, ADIR010910-PA, ADIR000914-PA
Anopheles farauti AFARA 3 AFAF010800-PA, AFAF006204-PA, AFAF014588-PA
Anopheles epiroticus AEPIR 5 AEPI001021-PA, AEPI001022-PA, AEPI002518-PA, AEPI001784-PA, AEPI002517-PA
Anopheles christyi ACHRI 5 ACHR010257-PA, ACHR009315-PA, ACHR005007-PA, ACHR009740-PA, ACHR005743-PA
Anopheles merus AMERU 3 AMEM006319-PA, AMEM002876-PA, AMEM003107-PA
Anopheles melas AMELA 3 AMEC006716-PA, AMEC021586-PA, AMEC020645-PA
Anopheles arabiensis AARAB 4 AARA018219-PA, AARA011702-PA, AARA011703-PA, AARA006788-PA
Anopheles coluzzii ACOLU 3 ACOM035991-PA, ACOM042139-PA, ACOM023882-PA
Anopheles coluzzii ngousso ACOLUN 3 ACON008588-PA, ACON002152-PA, ACON000962-PA
Anopheles gambiae AGAMB 3 AGAP008588-PA, AGAP002152-PA, AGAP000962-PA
Anopheles quadriannulatus AQUAD 6 AQUA009015-PA, AQUA005238-PA, AQUA008984-PA, AQUA005237-PA, AQUA009014-PA, AQUA005239-PA
Anopheles minimus AMINI 4 AMIN003113-PA, AMIN009153-PA, AMIN009154-PA, AMIN005120-PA
Anopheles culicifacies ACULI 7 ACUA021592-PA, ACUA018562-PA, ACUA000819-PA, ACUA000081-PA, ACUA019045-PA, ACUA005110-PA, ACUA026481-PA
Anopheles funestus AFUNE 3 AFUN020118-PA, AFUN020104-PA, AFUN007705-PA
Anopheles stephensi indian ASTEPI 4 ASTEI03586-PA, ASTEI10476-PA, ASTEI10477-PA, ASTEI00549-PA
Anopheles stephensi ASTEP 5 ASTE003232-PA, ASTE003231-PA, ASTE003233-PA, ASTE000727-PA, ASTE000247-PA
Anopheles albimanus AALBI 4 AALB007632-PA, AALB002250-PA, AALB000073-PA, AALB000072-PA
Anopheles darlingi ADARL 3 ADAC005921-PA, ADAC000560-PA, ADAC003074-PA
Drosophila willistoni DWILL 3 FBpp0244174, FBpp0377879, FBpp0375510
Drosophila pseudoobscura DPSEU 3 FBpp0329372, FBpp0330468, FBpp0337118
Drosophila persimilis DPERS 5 FBpp0184571, FBpp0179202, FBpp0182158, FBpp0183313, FBpp0185366
Drosophila ananassae DANAN 4 FBpp0123348, FBpp0117471, FBpp0342984, FBpp0352034
Drosophila melanogaster DMELA 3 FBpp0079502, FBpp0423154, FBpp0291049
Drosophila sechellia DSECH 3 FBpp0196954, FBpp0204222, FBpp0193710
Drosophila simulans DSIMU 3 FBpp0316182, FBpp0316866, FBpp0315358
Drosophila erecta DEREC 3 FBpp0373658, FBpp0142456, FBpp0371061
Drosophila yakuba DYAKU 3 FBpp0361227, FBpp0354377, FBpp0264033
Drosophila virilis DVIRI 3 FBpp0398676, FBpp0232588, FBpp0392868
Drosophila mojavensis DMOJA 3 FBpp0388852, FBpp0387808, FBpp0386603
Drosophila grimshawi DGRIM 3 FBpp0404538, FBpp0408986, FBpp0415965
Lucilia cuprina LCUPR 4 KNC22992, KNC22799, KNC22988, KNC20838
Musca domestica MDOME 5 MDOA001811-PB, MDOA002676-PB, MDOA015403-PB, MDOA012051-PB, MDOA006151-PB
Stomoxys calcitrans SCALC 4 SCAU010302-PA, SCAU003191-PA, SCAU010943-PA, SCAU009780-PA
Glossina brevipalpis GBREV 4 GBRI008283-PA, GBRI008284-PA, GBRI008282-PA, GBRI004577-PA
Glossina palpalis GPALP 7 GPPI046178-PA, GPPI014929-PA, GPPI019988-PA, GPPI046175-PA, GPPI019989-PA, GPPI020002-PA, GPPI014918-PA
Glossina austeni GAUST 10 GAUT022617-PA, GAUT050700-PA, GAUT047798-PA, GAUT022609-PA, GAUT022618-PA, GAUT050699-PA, GAUT047806-PA, GAUT050701-PA, GAUT047805-PA, GAUT047831-PA
Glossina pallidipes GPALL 7 GPAI012208-PA, GPAI012192-PA, GPAI014603-PA, GPAI014604-PA, GPAI037393-PA, GPAI037395-PA, GPAI012213-PA
Glossina morsitans GMORS 3 GMOY012307-PA, GMOY012039-PA, GMOY006306-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13491.t1) is OG0000337. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN75987_c0_g1_i1.p2, TRINITY_DN280_c1_g1_i8.p1
Parochlus steinenii PSTEI PSG13257, PSG13238, PSG04708, PSG04709, PSG03047
Trissopelopia nemorum TNEMO TRINITY_DN33827_c0_g1_i1.p1, TRINITY_DN5536_c1_g1_i1.p1, TRINITY_DN19568_c0_g1_i1.p1, TRINITY_DN5536_c0_g2_i1.p1, TRINITY_DN5536_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN5399_c0_g3_i1.p1, TRINITY_DN5399_c0_g2_i1.p1, TRINITY_DN32061_c0_g1_i1.p1, TRINITY_DN7868_c1_g1_i1.p1, TRINITY_DN5399_c0_g1_i2.p1, TRINITY_DN2310_c7_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN2791_c0_g3_i6.p1, TRINITY_DN380_c32_g1_i1.p1, TRINITY_DN294_c3_g1_i4.p1, TRINITY_DN14357_c0_g2_i4.p2
Cricotopus draysoni CDRAY TRINITY_DN52577_c0_g1_i1.p1
Clunio marinus CMARI CRK93340.1, CRK93806.1, CRL04701.1, CRK93341.1
Cardiocladius sp CARDI TRINITY_DN53459_c0_g1_i1.p1, TRINITY_DN13291_c0_g1_i3.p1, TRINITY_DN51614_c0_g1_i1.p1
Belgica antarctica BANTA IU25_00047-mRNA-1, IU25_06221-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN51565_c0_g1_i1.p1, TRINITY_DN249828_c0_g1_i1.p1, TRINITY_DN41270_c0_g1_i1.p1, TRINITY_DN7380_c0_g1_i5.p1, TRINITY_DN30743_c0_g2_i1.p1, TRINITY_DN22819_c0_g1_i6.p4, TRINITY_DN43156_c1_g1_i1.p1, TRINITY_DN55710_c0_g2_i1.p1, TRINITY_DN59761_c0_g1_i1.p3, TRINITY_DN41605_c0_g1_i3.p1, TRINITY_DN17383_c0_g1_i1.p1
Chironomus riparius CRIPA g16622.t1, g14609.t1, g14304.t1, g1500.t1, g13445.t1
Chironomus columbiensis CCOLU TRINITY_DN43745_c0_g1_i1.p1, TRINITY_DN15941_c0_g2_i1.p1, TRINITY_DN59948_c0_g1_i1.p1, TRINITY_DN48811_c0_g1_i3.p1
Chironomus tentans CTENT g1404.t1, g8200.t1, g15250.t1, g10295.t1
Chironomus dilutus CDILU TRINITY_DN32824_c0_g1_i1.p2, TRINITY_DN24576_c0_g1_i1.p1, TRINITY_DN18843_c0_g2_i4.p1, TRINITY_DN19149_c0_g1_i1.p1, TRINITY_DN17117_c0_g2_i1.p1, TRINITY_DN17117_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.15108, Pn.12994, Pn.14579, Pn.15774, Pn.01121
Polypedilum vanderplanki PVAND g13489.t1, g6292.t1, g6291.t1, g13491.t1, g5603.t1
Polypedilum pembai PPEMB g11072.t1, g11332.t1, g1629.t1, g13076.t1, g5645.t1, g3688.t1
Culicoides sonorensis CSONO CSON009240-1, CSON003587-1, CSON009239-1, CSON009230-1, CSON004536-1
Aedes aegypti lvpagwg AAEGYL AAEL018352-PB, AAEL008055-PC, AAEL007664-PB
Anopheles gambiae AGAMB AGAP008588-PA, AGAP002152-PA, AGAP000962-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation