General information for g13653.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13653 is located on chr_1: 31417883..31422253 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13653 | g13653.t4 | isoform | g13653.t4 | 31416554 | 31417883 |
| chr_1 | g13653 | g13653.t4 | exon | g13653.t4.exon1 | 31416554 | 31417641 |
| chr_1 | g13653 | g13653.t4 | cds | g13653.t4.CDS1 | 31416768 | 31417641 |
| chr_1 | g13653 | g13653.t4 | exon | g13653.t4.exon2 | 31417700 | 31417883 |
| chr_1 | g13653 | g13653.t4 | cds | g13653.t4.CDS2 | 31417700 | 31417881 |
| chr_1 | g13653 | g13653.t4 | TTS | g13653.t4 | 31418722 | 31418722 |
| chr_1 | g13653 | g13653.t4 | TSS | g13653.t4 | NA | NA |
Sequences
>g13653.t4 Gene=g13653 Length=1272
AATCGGGAGAACTGGACGTTGTGAGCAAACTGGAACAGCTTATACGTTCTTTACACCATC
AAATGCACGTCAAGCTCGTGAATTGATTGCAGTTTTGAATGAGGCTGGTCAAAGTCCAAC
AAAAGAACTTTTGGATCTTGCAAAAAGTATTCCTGGCAAAGGAAATCAAAGGATCAATTC
ACGATTCGGTCGTCCAGATCAATATAATAAACCAATGAATCATTTTAATAATGGTATGAA
ACCGATGAATGGACCAGGAGGTTGGATGAATAATGGTGTAAATCAGAATATGAATGGCTA
TCATAACTCGACTAACACTTTCAACAGAACCGGAGATAGATTCAACAATAAGAGTGATCA
ACAACAGCGACCATTCAATAAATACAACAATTCACAGAATAATGACGAAGAGAAAAAGTA
TGACGGTTACAAGAGAAATCCTGATTTCAATAATCGATTCAAAAATCCAATGCAAAATGG
CTTTGTTAATAATCAAACAGTTCCACCACAACAACAACCACAACAGAATGGATATCAAAA
GAATTTTGCTGGTCAAGAAGGTGGCTACAAGCCTCGTAATTCGTTTGTTAAGCCAGATTT
CAATGGAAATCCGCGCAACAATCAGCATTTTGGTGGTGAAAAGCCTCCATTCCAAAATAA
TTATATGGGCAATAAACCACGTGCTCCATTTAACAGCAATGGACCGGCTCCACGTTTTGC
AAATGGTGGTAATAATTTGAATGGTAACGAATATGCAGGAGGTTCACAAAAGTATAACAA
ATTTGAAAACTATAAAAGTGCTGCATATGGTGAAAAAACTGAGGGCAGCGATGTTTTTCA
AGGTGTGAAAAGTTTCAATTCTCATCAATCGGGTGGACGTCATTACAATTCTGGAAATCG
CTTCAATGAACATCAAAATGGTACAATCGACGGTCAGACACCACAAGCTGTTCATGCTCA
ACAGCCACCACCACAACAGTTTGTTCAAGCTGATGCCATTGATGGTGCTCAAGCTTTTGA
TTCCAATATGATTGCTGGTTATCGTATGGTTGCAAATGGAACTATTCCACCATTTCCACC
AGCATTCGCAACAGCAGATTTTCAACAGCGTCCTCAAGCAAATGGACAACCTATTGCGGA
TATCAATAATCCTTGCGCATTCCAGAACATCCAAGGAGCGCCTCAATCGCGTCAACAAAT
GTATGTGATTGGAGCACCACCACCAACTGCAACACCTTACGCAATTCAATTCCAACATAC
TGCTGTTCAACC
>g13653.t4 Gene=g13653 Length=352
MNHFNNGMKPMNGPGGWMNNGVNQNMNGYHNSTNTFNRTGDRFNNKSDQQQRPFNKYNNS
QNNDEEKKYDGYKRNPDFNNRFKNPMQNGFVNNQTVPPQQQPQQNGYQKNFAGQEGGYKP
RNSFVKPDFNGNPRNNQHFGGEKPPFQNNYMGNKPRAPFNSNGPAPRFANGGNNLNGNEY
AGGSQKYNKFENYKSAAYGEKTEGSDVFQGVKSFNSHQSGGRHYNSGNRFNEHQNGTIDG
QTPQAVHAQQPPPQQFVQADAIDGAQAFDSNMIAGYRMVANGTIPPFPPAFATADFQQRP
QANGQPIADINNPCAFQNIQGAPQSRQQMYVIGAPPPTATPYAIQFQHTAVQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13653.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 60 | - |
| g13653.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 69 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
