Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g13653.t1
  • List of isoforms

g13653.t1, g13653.t2, g13653.t3, g13653.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko03040
ko05202
ko05205

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13653.t1) is OG0000148. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012063616.1, XP_012063672.1, XP_012058020.1, XP_012058671.1
Apis mellifera AMELL 5 GB47313-PA, GB43623-PA, GB42279-PA, GB54511-PA, GB42277-PA
Culicoides sonorensis CSONO 6 CSON003703-3, CSON002286-1, CSON008330-1, CSON014890-1, CSON014262-1, CSON014261-1
Polypedilum nubifer PNUBI 3 Pn.00886, Pn.12841, Pn.07709
Polypedilum vanderplanki PVAND 3 g7724.t1, g7055.t1, g13653.t1
Polypedilum pembai PPEMB 3 g9007.t1, g2287.t1, g9171.t1
Belgica antarctica BANTA 4 IU25_10149-mRNA-1, IU25_11384-mRNA-1, IU25_01901-mRNA-1, IU25_11385-mRNA-1
Clunio marinus CMARI 3 CRL02747.1, CRK96538.1, CRL03105.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL002351-PA, AAEL010787-PA, AAEL008738-PA, AAEL002083-PA, AAEL001769-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS41078.1, EDS37092.1, EDS44941.1, EDS33157.1, EDS41578.1
Culex quinquefasciatus CQUIN 5 CPIJ016569-PA, CPIJ009445-PA, CPIJ003935-PA, CPIJ014935-PA, CPIJ012512-PA
Anopheles atroparvus AATRO 3 AATE010547-PA, AATE011682-PA, AATE012237-PA
Anopheles sinensis china ASINEC 4 ASIC011770-PA, ASIC003594-PA, ASIC012957-PA, ASIC004978-PA
Anopheles dirus ADIRU 4 ADIR009651-PA, ADIR003736-PA, ADIR006893-PA, ADIR001678-PA
Anopheles farauti AFARA 5 AFAF007429-PA, AFAF014788-PA, AFAF009240-PA, AFAF004982-PA, AFAF017918-PA
Anopheles epiroticus AEPIR 4 AEPI005680-PA, AEPI010847-PA, AEPI006439-PA, AEPI010213-PA
Anopheles christyi ACHRI 4 ACHR009246-PA, ACHR003973-PA, ACHR004996-PA, ACHR000864-PA
Anopheles merus AMERU 4 AMEM004487-PA, AMEM013648-PA, AMEM005778-PA, AMEM009176-PA
Anopheles melas AMELA 4 AMEC009986-PA, AMEC020840-PA, AMEC008787-PA, AMEC020717-PA
Anopheles arabiensis AARAB 3 AARA002441-PA, AARA000833-PA, AARA003517-PB
Anopheles coluzzii ACOLU 4 ACOM026656-PA, ACOM036373-PA, ACOM027903-PA, ACOM038867-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON005652-PA, ACON004912-PA, ACON005351-PA, ACON003663-PB, ACON012045-PA
Anopheles gambiae AGAMB 5 AGAP005652-PA, AGAP005351-PA, AGAP003663-PA, AGAP004912-PB, AGAP012045-PA
Anopheles quadriannulatus AQUAD 5 AQUA011210-PA, AQUA000316-PA, AQUA007724-PA, AQUA005869-PA, AQUA016734-PA
Anopheles minimus AMINI 4 AMIN011411-PA, AMIN008225-PA, AMIN007394-PA, AMIN010181-PA
Anopheles culicifacies ACULI 5 ACUA011638-PA, ACUA023353-PA, ACUA016975-PA, ACUA009344-PA, ACUA005764-PA
Anopheles funestus AFUNE 5 AFUN003466-PB, AFUN009326-PA, AFUN000404-PA, AFUN021504-PA, AFUN005047-PA
Anopheles stephensi indian ASTEPI 4 ASTEI10055-PA, ASTEI10637-PA, ASTEI06121-PA, ASTEI02244-PA
Anopheles stephensi ASTEP 4 ASTE002652-PA, ASTE009561-PA, ASTE001843-PA, ASTE010197-PA
Anopheles albimanus AALBI 4 AALB004958-PA, AALB006128-PA, AALB009780-PA, AALB004990-PA
Anopheles darlingi ADARL 4 ADAC006310-PA, ADAC006331-PA, ADAC001628-PA, ADAC001569-PA
Drosophila willistoni DWILL 4 FBpp0243357, FBpp0245419, FBpp0241693, FBpp0374712
Drosophila pseudoobscura DPSEU 4 FBpp0286954, FBpp0284092, FBpp0286687, FBpp0273305
Drosophila persimilis DPERS 4 FBpp0179356, FBpp0187596, FBpp0180203, FBpp0177336
Drosophila ananassae DANAN 5 FBpp0350078, FBpp0127942, FBpp0348044, FBpp0121826, FBpp0124187
Drosophila melanogaster DMELA 4 FBpp0071084, FBpp0078301, FBpp0300877, FBpp0076649
Drosophila sechellia DSECH 4 FBpp0195285, FBpp0192055, FBpp0193982, FBpp0193439
Drosophila simulans DSIMU 4 FBpp0313706, FBpp0317157, FBpp0214542, FBpp0313454
Drosophila erecta DEREC 4 FBpp0129212, FBpp0372625, FBpp0370333, FBpp0136143
Drosophila yakuba DYAKU 4 FBpp0363368, FBpp0269133, FBpp0363430, FBpp0262507
Drosophila virilis DVIRI 4 FBpp0396565, FBpp0226679, FBpp0233904, FBpp0228916
Drosophila mojavensis DMOJA 4 FBpp0164039, FBpp0161586, FBpp0172401, FBpp0161741
Drosophila grimshawi DGRIM 4 FBpp0421018, FBpp0156486, FBpp0148195, FBpp0158681
Lucilia cuprina LCUPR 4 KNC26897, KNC24428, KNC25069, KNC24400
Musca domestica MDOME 4 MDOA014154-PA, MDOA006873-PA, MDOA001276-PA, MDOA001045-PA
Stomoxys calcitrans SCALC 4 SCAU010872-PA, SCAU010298-PA, SCAU015902-PA, SCAU010285-PA
Glossina brevipalpis GBREV 3 GBRI010338-PA, GBRI031738-PA, GBRI013307-PA
Glossina palpalis GPALP 2 GPPI026631-PA, GPPI047552-PA
Glossina austeni GAUST 3 GAUT017734-PA, GAUT047561-PA, GAUT019488-PA
Glossina pallidipes GPALL 4 GPAI013556-PA, GPAI005179-PA, GPAI023149-PA, GPAI017803-PA
Glossina morsitans GMORS 5 GMOY001858-PA, GMOY009698-PA, GMOY002040-PA, GMOY004429-PA, GMOY004318-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13653.t1) is OG0000352. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN968_c0_g1_i6.p1, TRINITY_DN330_c1_g2_i7.p1, TRINITY_DN25495_c0_g1_i1.p1, TRINITY_DN25495_c1_g1_i1.p4, TRINITY_DN330_c1_g1_i1.p1, TRINITY_DN9953_c1_g1_i2.p1
Parochlus steinenii PSTEI PSG09675, PSG02711, PSG08393
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN151_c0_g1_i4.p1, TRINITY_DN151_c0_g12_i1.p1, TRINITY_DN151_c0_g10_i1.p1, TRINITY_DN151_c0_g7_i1.p1, TRINITY_DN1862_c0_g1_i32.p1, TRINITY_DN151_c0_g4_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c9257_g1_i1.p2, TRINITY_DN1917_c0_g2_i4.p1, TRINITY_DN1236_c0_g2_i8.p1
Cricotopus draysoni CDRAY TRINITY_DN18411_c0_g1_i1.p1, TRINITY_DN24120_c0_g1_i1.p1, TRINITY_DN21471_c0_g1_i1.p1, TRINITY_DN92395_c0_g1_i1.p1, TRINITY_DN87638_c0_g1_i1.p1, TRINITY_DN6408_c0_g1_i1.p1, TRINITY_DN34585_c0_g1_i1.p1, TRINITY_DN42731_c0_g1_i1.p1, TRINITY_DN2160_c0_g1_i1.p1, TRINITY_DN9480_c0_g1_i1.p1, TRINITY_DN510_c0_g1_i2.p1, TRINITY_DN2771_c1_g1_i1.p1, TRINITY_DN49446_c0_g1_i1.p1, TRINITY_DN20333_c0_g1_i1.p1
Clunio marinus CMARI CRL02747.1, CRK96538.1
Cardiocladius sp CARDI TRINITY_DN1278_c0_g2_i4.p1, TRINITY_DN2818_c0_g1_i4.p1, TRINITY_DN330_c0_g1_i2.p1
Belgica antarctica BANTA IU25_10149-mRNA-1, IU25_11384-mRNA-1, IU25_01901-mRNA-1, IU25_11385-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN9632_c0_g1_i7.p1, TRINITY_DN449_c0_g2_i1.p1, TRINITY_DN449_c0_g1_i5.p1, TRINITY_DN58607_c0_g1_i4.p1, TRINITY_DN2725_c0_g2_i2.p1, TRINITY_DN26115_c0_g1_i1.p1, TRINITY_DN2077_c0_g1_i15.p1, TRINITY_DN27496_c1_g1_i1.p1, TRINITY_DN196213_c0_g1_i1.p3
Chironomus riparius CRIPA g3088.t1, g11170.t1, g14355.t1, g5264.t1
Chironomus columbiensis CCOLU TRINITY_DN2181_c0_g1_i10.p1, TRINITY_DN4943_c0_g1_i1.p1, TRINITY_DN264_c0_g1_i1.p1, TRINITY_DN2181_c0_g2_i1.p1, TRINITY_DN23907_c0_g1_i1.p1
Chironomus tentans CTENT g3797.t1, g6365.t1, g11812.t1
Chironomus dilutus CDILU TRINITY_DN803_c0_g2_i2.p1, TRINITY_DN803_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.00886, Pn.12841, Pn.07709
Polypedilum vanderplanki PVAND g7724.t1, g13653.t1
Polypedilum pembai PPEMB g9007.t1, g9171.t1
Culicoides sonorensis CSONO CSON003703-3, CSON002286-1, CSON008330-1, CSON014890-1, CSON014262-1, CSON014261-1
Aedes aegypti lvpagwg AAEGYL AAEL002351-PA, AAEL010787-PA, AAEL008738-PA, AAEL002083-PA, AAEL001769-PA
Anopheles gambiae AGAMB AGAP005652-PA, AGAP005351-PA, AGAP003663-PA, AGAP004912-PB, AGAP012045-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation