General information for g13949.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g13949 is located on chr_1: 33556394..33558250 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13949 | g13949.t2 | TSS | g13949.t2 | 33556342 | 33556342 |
| chr_1 | g13949 | g13949.t2 | isoform | g13949.t2 | 33556394 | 33557187 |
| chr_1 | g13949 | g13949.t2 | exon | g13949.t2.exon1 | 33556394 | 33557187 |
| chr_1 | g13949 | g13949.t2 | cds | g13949.t2.CDS1 | 33556394 | 33557185 |
| chr_1 | g13949 | g13949.t2 | TTS | g13949.t2 | NA | NA |
Sequences
>g13949.t2 Gene=g13949 Length=794
ATGAGAATCATAAGTCATTCGGATACAATTGTATCGAGAATTAAAAGTGAAATTTTTGAA
ATAAACCGTAATGAATCAGAATGGACAAAGAAAGTTCCATCAATTCCTGAATTCTACTCA
AATCGTGAATTATTTGTCACTGGTGCAACTGGATTTATTGGTAAAGTTTTGATAGAAAAA
TTGTTAAGGTCATGCAGTGACCTTAAATGCATTTACATATTATTGAGGCCAAAGAAAGGC
AAGTCTGTAGATGAACGATTGAAGCAATTGATTGAGTTGCCATTGTTTGAACCAATCAAG
AATTTCAAGCCTCAACTTTTCGACAAGCTGATACCGATTACAGGTGATGTCACTGAAATT
AATTTGGGACTTTCTGATTCTGACATGGTCCGAATGAAGAATGTTTCTGTCATTTTTCAT
TCTGCCGCGAGTGTTCGATTTGACGACACATTGCGCTATGCTGTATTCATGAATACACGT
GGCACAAGAGAGATTATGAAATTTGCAAAGAATTTGAAGAACATCAAAGTTCTTATGCAC
GTGTCAACGACCTATTCTCATCCTGAATTGAAGACTGTCAATGAGGTCATACATGAGCCA
TATGTTGATTGGAAGAAAACAATTGAAATTTGTGAACGATTTGATGACAATATTTTGAGC
ATTTTAACTCAACAATACACAGGTTTTATGCCGAACACCTACACATTTACAAAAGCATTA
GCAGAGCAGGTTGTTGCAGATGAGAAGGATAATTTGCCGTTAGCACTATTTAGGCCATCC
ATTGTTATTGCATC
>g13949.t2 Gene=g13949 Length=264
MRIISHSDTIVSRIKSEIFEINRNESEWTKKVPSIPEFYSNRELFVTGATGFIGKVLIEK
LLRSCSDLKCIYILLRPKKGKSVDERLKQLIELPLFEPIKNFKPQLFDKLIPITGDVTEI
NLGLSDSDMVRMKNVSVIFHSAASVRFDDTLRYAVFMNTRGTREIMKFAKNLKNIKVLMH
VSTTYSHPELKTVNEVIHEPYVDWKKTIEICERFDDNILSILTQQYTGFMPNTYTFTKAL
AEQVVADEKDNLPLALFRPSIVIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13949.t2 | CDD | cd05236 | FAR-N_SDR_e | 42 | 264 | 0 |
| 5 | g13949.t2 | Gene3D | G3DSA:3.40.50.720 | - | 21 | 264 | 0 |
| 2 | g13949.t2 | PANTHER | PTHR11011:SF24 | FATTY ACYL-COA REDUCTASE | 32 | 263 | 0 |
| 3 | g13949.t2 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 32 | 263 | 0 |
| 1 | g13949.t2 | Pfam | PF07993 | Male sterility protein | 46 | 263 | 0 |
| 4 | g13949.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 35 | 263 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed