Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g13949.t1
  • List of isoforms

g13949.t1, g13949.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00073
ko04146
ko04212

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13949.t1) is OG0000251. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012060302.1, XP_012060304.1, XP_012060303.1
Apis mellifera AMELL 1 GB55263-PA
Culicoides sonorensis CSONO 7 CSON009863-1, CSON012387-1, CSON012385-1, CSON007191-1, CSON012389-1, CSON011541-1, CSON002211-1
Polypedilum nubifer PNUBI 4 Pn.14855, Pn.07940, Pn.06133, Pn.08935
Polypedilum vanderplanki PVAND 5 g1532.t1, g10075.t1, g6866.t1, g13949.t1, g4853.t1
Polypedilum pembai PPEMB 5 g11901.t1, g10307.t1, g14236.t1, g3008.t1, g10263.t1
Belgica antarctica BANTA 7 IU25_08274-mRNA-1, IU25_07447-mRNA-1, IU25_02990-mRNA-1, IU25_07542-mRNA-1, IU25_00297-mRNA-1, IU25_07136-mRNA-1, IU25_11926-mRNA-1
Clunio marinus CMARI 3 CRK89308.1, CRK98511.1, CRK98215.1
Aedes aegypti lvpagwg AAEGYL 7 AAEL027155-PA, AAEL026746-PA, AAEL013910-PA, AAEL024012-PA, AAEL021335-PA, AAEL013912-PA, AAEL024693-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS37022.1, EDS42239.1, EDS42238.1, EDS42237.1
Culex quinquefasciatus CQUIN 4 CPIJ012333-PA, CPIJ004392-PA, CPIJ004391-PA, CPIJ004393-PA
Anopheles atroparvus AATRO 3 AATE005243-PA, AATE012819-PA, AATE013921-PA
Anopheles sinensis china ASINEC 3 ASIC014975-PA, ASIC007959-PA, ASIC014971-PA
Anopheles dirus ADIRU 3 ADIR009185-PA, ADIR000886-PA, ADIR009182-PA
Anopheles farauti AFARA 3 AFAF018407-PA, AFAF014175-PA, AFAF014840-PA
Anopheles epiroticus AEPIR 3 AEPI008676-PA, AEPI008673-PA, AEPI011326-PA
Anopheles christyi ACHRI 3 ACHR007723-PA, ACHR004141-PA, ACHR005816-PA
Anopheles merus AMERU 1 AMEM003574-PA
Anopheles melas AMELA 1 AMEC013995-PA
Anopheles arabiensis AARAB 3 AARA006172-PA, AARA006036-PA, AARA006033-PA
Anopheles coluzzii ACOLU 3 ACOM040071-PA, ACOM038407-PA, ACOM038404-PA
Anopheles coluzzii ngousso ACOLUN 3 ACON004784-PA, ACON004787-PA, ACON001084-PA
Anopheles gambiae AGAMB 3 AGAP004787-PA, AGAP001084-PA, AGAP004784-PA
Anopheles quadriannulatus AQUAD 3 AQUA002595-PA, AQUA003271-PA, AQUA002598-PA
Anopheles minimus AMINI 3 AMIN008126-PA, AMIN005744-PA, AMIN008129-PA
Anopheles culicifacies ACULI 3 ACUA014341-PA, ACUA011671-PA, ACUA014632-PA
Anopheles funestus AFUNE 4 AFUN019025-PA, AFUN010955-PA, AFUN010958-PA, AFUN022175-PA
Anopheles stephensi indian ASTEPI 3 ASTEI07755-PA, ASTEI08090-PA, ASTEI08093-PA
Anopheles stephensi ASTEP 3 ASTE003573-PA, ASTE006081-PA, ASTE001330-PA
Anopheles albimanus AALBI 3 AALB007509-PA, AALB006786-PA, AALB007511-PA
Anopheles darlingi ADARL 3 ADAC008225-PA, ADAC000069-PA, ADAC004349-PA
Drosophila willistoni DWILL 1 FBpp0375563
Drosophila pseudoobscura DPSEU 1 FBpp0281851
Drosophila persimilis DPERS 2 FBpp0180072, FBpp0178996
Drosophila ananassae DANAN 1 FBpp0125270
Drosophila melanogaster DMELA 1 FBpp0070789
Drosophila sechellia DSECH 1 FBpp0193925
Drosophila simulans DSIMU 1 FBpp0215167
Drosophila erecta DEREC 1 FBpp0137344
Drosophila yakuba DYAKU 1 FBpp0262569
Drosophila virilis DVIRI 1 FBpp0229165
Drosophila mojavensis DMOJA 1 FBpp0164530
Drosophila grimshawi DGRIM 1 FBpp0158279
Lucilia cuprina LCUPR 3 KNC33921, KNC28614, KNC23423
Musca domestica MDOME 6 MDOA010818-PB, MDOA010137-PA, MDOA013369-PA, MDOA010528-PA, MDOA003500-PB, MDOA007609-PA
Stomoxys calcitrans SCALC 4 SCAU008563-PA, SCAU004908-PA, SCAU010440-PA, SCAU002597-PA
Glossina brevipalpis GBREV 5 GBRI044595-PA, GBRI033889-PA, GBRI033895-PA, GBRI015775-PA, GBRI033890-PA
Glossina palpalis GPALP 4 GPPI033781-PA, GPPI000968-PA, GPPI042561-PA, GPPI014470-PA
Glossina austeni GAUST 4 GAUT032455-PA, GAUT032452-PA, GAUT015594-PA, GAUT032866-PA
Glossina pallidipes GPALL 5 GPAI003908-PA, GPAI038790-PA, GPAI011562-PA, GPAI033353-PA, GPAI003906-PA
Glossina morsitans GMORS 5 GMOY006486-PA, GMOY002273-PA, GMOY008081-PA, GMOY008080-PA, GMOY007084-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13949.t1) is OG0000217. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN137_c13_g1_i1.p2, TRINITY_DN10059_c0_g1_i2.p1, TRINITY_DN46527_c0_g1_i1.p1, TRINITY_DN371_c0_g1_i18.p1, TRINITY_DN23504_c0_g1_i2.p1, TRINITY_DN99_c1_g2_i1.p1, TRINITY_DN17133_c1_g1_i1.p2
Parochlus steinenii PSTEI PSG09825, PSG07267, PSG12064, PSG03772
Trissopelopia nemorum TNEMO TRINITY_DN9474_c0_g1_i2.p1, TRINITY_DN6791_c0_g1_i6.p1, TRINITY_DN11551_c0_g1_i1.p1, TRINITY_DN12796_c0_g1_i3.p1, TRINITY_DN34351_c0_g1_i1.p2
Paraheptagyia tonnoiri PTONN TRINITY_DN6125_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN26154_c0_g1_i2.p1, TRINITY_DN10144_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN29850_c0_g1_i1.p1, TRINITY_DN6927_c0_g1_i1.p1, TRINITY_DN3331_c0_g1_i1.p1, TRINITY_DN31748_c0_g1_i1.p1, TRINITY_DN12202_c0_g1_i1.p1
Clunio marinus CMARI CRK89308.1, CRK98511.1
Cardiocladius sp CARDI TRINITY_DN28838_c0_g1_i1.p1, TRINITY_DN226_c0_g2_i1.p1, TRINITY_DN5044_c0_g1_i10.p1, TRINITY_DN1722_c0_g1_i1.p1, TRINITY_DN2148_c0_g1_i7.p1, TRINITY_DN226_c0_g1_i2.p1
Belgica antarctica BANTA IU25_13078-mRNA-1, IU25_07447-mRNA-1, IU25_02990-mRNA-1, IU25_07542-mRNA-1, IU25_07136-mRNA-1, IU25_11926-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN55637_c0_g1_i2.p1, TRINITY_DN161626_c0_g1_i1.p1, TRINITY_DN40993_c0_g1_i2.p1, TRINITY_DN228671_c0_g1_i1.p1, TRINITY_DN226276_c0_g1_i1.p1, TRINITY_DN53810_c0_g1_i1.p1, TRINITY_DN39048_c0_g1_i1.p1, TRINITY_DN36330_c0_g1_i1.p1, TRINITY_DN2078_c0_g1_i13.p1, TRINITY_DN26245_c0_g1_i7.p1, TRINITY_DN2889_c0_g1_i9.p1, TRINITY_DN23347_c0_g2_i1.p1, TRINITY_DN539_c0_g1_i1.p1
Chironomus riparius CRIPA g322.t1, g8936.t1, g1615.t1, g1616.t1, g13528.t1, g5487.t1
Chironomus columbiensis CCOLU TRINITY_DN7482_c0_g1_i1.p1, TRINITY_DN1454_c0_g1_i3.p1, TRINITY_DN3983_c0_g2_i1.p1, TRINITY_DN3983_c0_g1_i1.p1, TRINITY_DN7425_c0_g1_i5.p1, TRINITY_DN9296_c0_g1_i1.p1
Chironomus tentans CTENT g17427.t1, g17425.t1, g12957.t1, g15949.t1, g10230.t1, g9633.t1, g17772.t1
Chironomus dilutus CDILU TRINITY_DN4263_c0_g1_i3.p1, TRINITY_DN1580_c0_g1_i11.p1, TRINITY_DN1546_c0_g1_i4.p1, TRINITY_DN13019_c0_g3_i1.p1, TRINITY_DN28758_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.14855, Pn.07914, Pn.06133, Pn.06132, Pn.00623, Pn.16519, Pn.08935
Polypedilum vanderplanki PVAND g1532.t1, g6866.t1, g15692.t1, g13949.t1, g4853.t1
Polypedilum pembai PPEMB g10307.t1, g14236.t1, g14127.t1, g3008.t1, g10263.t1
Culicoides sonorensis CSONO CSON009863-1, CSON012387-1, CSON012385-1, CSON012389-1, CSON002211-1
Aedes aegypti lvpagwg AAEGYL AAEL026746-PA, AAEL024012-PA, AAEL027155-PA, AAEL013910-PA, AAEL013912-PA, AAEL021335-PA, AAEL024693-PA, AAEL026448-PA
Anopheles gambiae AGAMB AGAP004787-PA, AGAP001084-PA, AGAP004784-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation