Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g13965.t1
  • List of isoforms

g13965.t1, g13965.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04145
ko04540
ko05010
ko05012
ko05014
ko05016
ko05020
ko05022
ko05130
ko05132

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13965.t1) is OG0000084. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012062666.1, XP_012062670.1, XP_012062669.1, XP_012061022.1
Apis mellifera AMELL 5 GB44133-PA, GB41707-PA, GB44134-PA, GB44075-PA, GB44074-PA
Culicoides sonorensis CSONO 8 CSON001868-2, CSON008127-1, CSON015087-1, CSON015088-1, CSON004818-1, CSON000802-1, CSON012878-1, CSON014896-1
Polypedilum nubifer PNUBI 5 Pn.10012, Pn.04033, Pn.09350, Pn.01588, Pn.04034
Polypedilum vanderplanki PVAND 7 g13911.t1, g5213.t1, g8705.t1, g5214.t1, g134.t1, g13965.t1, g13912.t1
Polypedilum pembai PPEMB 7 g7456.t1, g7455.t1, g5315.t1, g1451.t1, g7366.t1, g11212.t1, g128.t1
Belgica antarctica BANTA 5 IU25_06121-mRNA-1, IU25_12457-mRNA-1, IU25_03134-mRNA-1, IU25_03136-mRNA-1, IU25_02510-mRNA-1
Clunio marinus CMARI 4 CRK87275.1, CRL07770.1, CRL06453.1, CRK87280.1
Aedes aegypti lvpagwg AAEGYL 6 AAEL005084-PA, AAEL004939-PA, AAEL002851-PA, AAEL002848-PA, AAEL005052-PA, AAEL019894-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 6 EDS37196.1, EDS37861.1, EDS40349.1, EDS37865.1, EDS37615.1, EDS37862.1
Culex quinquefasciatus CQUIN 6 CPIJ012634-PA, CPIJ003263-PA, CPIJ003260-PA, CPIJ003259-PA, CPIJ003635-PA, CPIJ000407-PA
Anopheles atroparvus AATRO 6 AATE018881-PA, AATE014535-PA, AATE011825-PA, AATE008962-PA, AATE014783-PA, AATE008854-PA
Anopheles sinensis china ASINEC 6 ASIC015638-PA, ASIC016161-PA, ASIC010609-PA, ASIC010449-PA, ASIC015635-PA, ASIC010647-PA
Anopheles dirus ADIRU 4 ADIR001677-PA, ADIR000343-PA, ADIR009091-PA, ADIR000344-PA
Anopheles farauti AFARA 5 AFAF001863-PA, AFAF018453-PA, AFAF020061-PA, AFAF003170-PA, AFAF010699-PA
Anopheles epiroticus AEPIR 5 AEPI001738-PA, AEPI010457-PA, AEPI006943-PA, AEPI007008-PA, AEPI010370-PA
Anopheles christyi ACHRI 5 ACHR006780-PA, ACHR007741-PA, ACHR002730-PA, ACHR001049-PA, ACHR008967-PA
Anopheles merus AMERU 4 AMEM001459-PA, AMEM005579-PA, AMEM012551-PA, AMEM000227-PA
Anopheles melas AMELA 5 AMEC000929-PA, AMEC003559-PA, AMEC015947-PA, AMEC005879-PA, AMEC000205-PA
Anopheles arabiensis AARAB 5 AARA005400-PA, AARA014954-PA, AARA011445-PA, AARA006327-PA, AARA003519-PA
Anopheles coluzzii ACOLU 5 ACOM036358-PA, ACOM027815-PA, ACOM042500-PA, ACOM022823-PA, ACOM041694-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON010510-PA, ACON010929-PA, ACON008622-PA, ACON005293-PA, ACON004914-PA
Anopheles gambiae AGAMB 5 AGAP008622-PA, AGAP010510-PA, AGAP004914-PA, AGAP005293-PA, AGAP010929-PA
Anopheles quadriannulatus AQUAD 5 AQUA001310-PA, AQUA000314-PA, AQUA000296-PA, AQUA014590-PA, AQUA001253-PA
Anopheles minimus AMINI 5 AMIN011412-PA, AMIN009310-PA, AMIN001255-PA, AMIN014712-PA, AMIN010757-PA
Anopheles culicifacies ACULI 5 ACUA004021-PA, ACUA025608-PA, ACUA024824-PA, ACUA000726-PA, ACUA010191-PA
Anopheles funestus AFUNE 6 AFUN008630-PA, AFUN006150-PA, AFUN020013-PA, AFUN019530-PA, AFUN016306-PA, AFUN008476-PA
Anopheles stephensi indian ASTEPI 5 ASTEI10195-PA, ASTEI07122-PA, ASTEI09889-PA, ASTEI06416-PA, ASTEI09032-PA
Anopheles stephensi ASTEP 5 ASTE011139-PA, ASTE003208-PA, ASTE000064-PA, ASTE010196-PA, ASTE006769-PA
Anopheles albimanus AALBI 0 none
Anopheles darlingi ADARL 6 ADAC001633-PA, ADAC004438-PA, ADAC002634-PA, ADAC008429-PA, ADAC005489-PA, ADAC002635-PA
Drosophila willistoni DWILL 5 FBpp0377590, FBpp0239364, FBpp0251346, FBpp0244849, FBpp0241276
Drosophila pseudoobscura DPSEU 6 FBpp0286338, FBpp0285108, FBpp0337328, FBpp0275792, FBpp0297023, FBpp0283262
Drosophila persimilis DPERS 4 FBpp0184002, FBpp0180832, FBpp0187982, FBpp0177778
Drosophila ananassae DANAN 4 FBpp0120957, FBpp0346225, FBpp0115797, FBpp0344354
Drosophila melanogaster DMELA 5 FBpp0289838, FBpp0085721, FBpp0072177, FBpp0076678, FBpp0081524
Drosophila sechellia DSECH 5 FBpp0207737, FBpp0201305, FBpp0193329, FBpp0197779, FBpp0196265
Drosophila simulans DSIMU 5 FBpp0212362, FBpp0314991, FBpp0223721, FBpp0219200, FBpp0319110
Drosophila erecta DEREC 5 FBpp0372735, FBpp0133894, FBpp0141506, FBpp0366439, FBpp0135920
Drosophila yakuba DYAKU 5 FBpp0363049, FBpp0269789, FBpp0258854, FBpp0266576, FBpp0259407
Drosophila virilis DVIRI 5 FBpp0236009, FBpp0234883, FBpp0233572, FBpp0396168, FBpp0237990
Drosophila mojavensis DMOJA 5 FBpp0172816, FBpp0381949, FBpp0169946, FBpp0170538, FBpp0163969
Drosophila grimshawi DGRIM 5 FBpp0153048, FBpp0154893, FBpp0154109, FBpp0409965, FBpp0146279
Lucilia cuprina LCUPR 5 KNC32156, KNC27524, KNC22620, KNC22195, KNC33181
Musca domestica MDOME 6 MDOA014791-PA, MDOA015478-PA, MDOA009168-PA, MDOA001534-PB, MDOA010409-PA, MDOA004897-PB
Stomoxys calcitrans SCALC 4 SCAU003208-PA, SCAU000453-PA, SCAU000039-PA, SCAU001258-PA
Glossina brevipalpis GBREV 9 GBRI009941-PA, GBRI036973-PA, GBRI036968-PA, GBRI036997-PA, GBRI036990-PA, GBRI044241-PA, GBRI012127-PA, GBRI038284-PA, GBRI044235-PA
Glossina palpalis GPALP 7 GPPI003889-PA, GPPI026908-PA, GPPI037056-PA, GPPI006035-PA, GPPI005721-PA, GPPI037058-PA, GPPI030940-PA
Glossina austeni GAUST 10 GAUT044539-PA, GAUT020306-PA, GAUT020307-PA, GAUT019715-PA, GAUT044531-PA, GAUT001083-PA, GAUT020301-PA, GAUT044081-PA, GAUT020309-PA, GAUT032162-PA
Glossina pallidipes GPALL 6 GPAI005007-PA, GPAI041983-PA, GPAI007927-PA, GPAI022614-PA, GPAI007926-PA, GPAI001417-PA
Glossina morsitans GMORS 9 GMOY009556-PA, GMOY006365-PA, GMOY002487-PA, GMOY011846-PA, GMOY011788-PA, GMOY000176-PA, GMOY000148-PA, GMOY009393-PA, GMOY000119-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13965.t1) is OG0000212. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN3624_c0_g1_i4.p1, TRINITY_DN2_c0_g1_i15.p1
Parochlus steinenii PSTEI PSG11049, PSG09488, PSG04074, PSG09489, PSG01855
Trissopelopia nemorum TNEMO TRINITY_DN239_c0_g1_i2.p1, TRINITY_DN1723_c0_g2_i1.p1, TRINITY_DN3032_c1_g1_i4.p1, TRINITY_DN2069_c0_g1_i4.p1, TRINITY_DN564_c0_g1_i4.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN3783_c0_g1_i1.p1, TRINITY_DN267_c0_g3_i3.p1, TRINITY_DN267_c0_g4_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN742_c0_g3_i1.p1, TRINITY_DN635_c0_g6_i3.p1
Cricotopus draysoni CDRAY TRINITY_DN46502_c0_g1_i1.p1, TRINITY_DN28525_c0_g1_i1.p1, TRINITY_DN18642_c0_g1_i1.p1, TRINITY_DN11772_c2_g1_i1.p1, TRINITY_DN540_c0_g1_i1.p1, TRINITY_DN107894_c0_g1_i1.p1, TRINITY_DN77473_c0_g1_i1.p1
Clunio marinus CMARI CRK87275.1, CRL07770.1, CRL06453.1, CRK87280.1
Cardiocladius sp CARDI TRINITY_DN2176_c0_g2_i2.p1, TRINITY_DN1734_c0_g1_i1.p1, TRINITY_DN2176_c0_g1_i2.p1
Belgica antarctica BANTA IU25_06121-mRNA-1, IU25_12457-mRNA-1, IU25_05912-mRNA-1, IU25_03134-mRNA-1, IU25_02510-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN4114_c0_g1_i25.p1, TRINITY_DN20738_c0_g1_i4.p1, TRINITY_DN84416_c2_g1_i1.p1, TRINITY_DN16584_c0_g2_i2.p1, TRINITY_DN33162_c0_g1_i2.p1, TRINITY_DN16584_c0_g1_i1.p1, TRINITY_DN40845_c0_g2_i5.p1
Chironomus riparius CRIPA g6113.t1, g7677.t1, g732.t1, g5732.t1, g10253.t1, g11926.t1, g10603.t1, g733.t1, g7676.t1
Chironomus columbiensis CCOLU TRINITY_DN3108_c0_g1_i3.p1, TRINITY_DN2116_c0_g3_i1.p1, TRINITY_DN504_c0_g1_i14.p1, TRINITY_DN19849_c0_g1_i1.p1, TRINITY_DN1055_c0_g1_i7.p1, TRINITY_DN504_c2_g1_i1.p1, TRINITY_DN23396_c0_g1_i1.p1
Chironomus tentans CTENT g15742.t1, g6943.t1, g6418.t1, g3028.t1, g2052.t1, g6942.t1
Chironomus dilutus CDILU TRINITY_DN5983_c0_g1_i1.p1, TRINITY_DN48428_c0_g1_i1.p1, TRINITY_DN686_c0_g1_i10.p1
Polypedilum nubifer PNUBI Pn.10012, Pn.04033, Pn.09350, Pn.01588, Pn.04034
Polypedilum vanderplanki PVAND g8705.t1, g13965.t1, g8708.t1, g13911.t1, g5213.t1, g134.t1, g5214.t1, g13912.t1
Polypedilum pembai PPEMB g7456.t1, g7455.t1, g1451.t1, g9960.t1, g7366.t1, g11212.t1, g128.t1
Culicoides sonorensis CSONO CSON001868-2, CSON008127-1, CSON005872-1, CSON015088-1, CSON015087-1, CSON004818-1, CSON000802-1, CSON012878-1, CSON014896-1
Aedes aegypti lvpagwg AAEGYL AAEL005084-PA, AAEL004939-PA, AAEL002851-PA, AAEL002848-PA, AAEL005052-PA, AAEL019894-PA
Anopheles gambiae AGAMB AGAP008622-PA, AGAP010510-PA, AGAP004914-PA, AGAP005293-PA, AGAP010929-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation