Gene loci information

Isoforms of this gene

  • There are 5 isoforms that are expressed from this gene.
  • The longest transcript is g14591.t1
  • List of isoforms

g14591.t1, g14591.t2, g14591.t3, g14591.t4, g14591.t5

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00500
ko01100
ko01110
ko04970
ko04972
ko04973

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g14591.t1) is OG0000114. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012056318.1, XP_012056372.1
Apis mellifera AMELL 1 GB49854-PA
Culicoides sonorensis CSONO 12 CSON013632-1, CSON002046-1, CSON011157-1, CSON008173-1, CSON014908-1, CSON007656-1, CSON012013-1, CSON013629-1, CSON014911-1, CSON012015-1, CSON011156-1, CSON011707-1
Polypedilum nubifer PNUBI 11 Pn.00443, Pn.13009, Pn.03119, Pn.06196, Pn.09075, Pn.10627, Pn.13008, Pn.02336, Pn.06326, Pn.13007, Pn.03120
Polypedilum vanderplanki PVAND 11 g597.t1, g4715.t1, g9055.t1, g7791.t1, g7809.t1, g7792.t1, g7793.t1, g17506.t1, g598.t1, g6053.t1, g14591.t1
Polypedilum pembai PPEMB 12 g11089.t1, g13455.t1, g4662.t1, g13456.t1, g227.t1, g14922.t1, g8388.t1, g5602.t1, g13592.t1, g11729.t1, g13448.t1, g14765.t1
Belgica antarctica BANTA 7 IU25_04568-mRNA-1, IU25_12515-mRNA-1, IU25_05475-mRNA-1, IU25_00015-mRNA-1, IU25_08163-mRNA-1, IU25_06452-mRNA-1, IU25_12514-mRNA-1
Clunio marinus CMARI 7 CRK95800.1, CRK90225.1, CRK90398.1, CRK89729.1, CRL04751.1, CRK93826.1, CRK89601.1
Aedes aegypti lvpagwg AAEGYL 9 AAEL008456-PA, AAEL013421-PA, AAEL026011-PA, AAEL008451-PA, AAEL008452-PA, AAEL026503-PA, AAEL006719-PA, AAEL007673-PA, AAEL001130-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 12 EDS43918.1, EDS45688.1, EDS43921.1, EDS27156.1, EDS43919.1, EDS45730.1, EDS43917.1, EDS43922.1, EDS45705.1, EDS30101.1, EDS29692.1, EDS34547.1
Culex quinquefasciatus CQUIN 12 CPIJ005061-PA, CPIJ007333-PA, CPIJ008079-PA, CPIJ017521-PA, CPIJ005062-PA, CPIJ005700-PA, CPIJ005064-PA, CPIJ005060-PA, CPIJ005725-PA, CPIJ001464-PA, CPIJ005065-PA, CPIJ018222-PA
Anopheles atroparvus AATRO 6 AATE009308-PA, AATE020129-PA, AATE009905-PA, AATE013253-PA, AATE003577-PA, AATE016046-PA
Anopheles sinensis china ASINEC 6 ASIC008790-PA, ASIC015402-PA, ASIC008791-PA, ASIC019382-PA, ASIC016621-PA, ASIC008789-PA
Anopheles dirus ADIRU 4 ADIR009531-PA, ADIR007445-PA, ADIR015571-PA, ADIR015570-PA
Anopheles farauti AFARA 5 AFAF010281-PA, AFAF003215-PA, AFAF011347-PA, AFAF004446-PA, AFAF005820-PA
Anopheles epiroticus AEPIR 2 AEPI004319-PA, AEPI005358-PA
Anopheles christyi ACHRI 3 ACHR002710-PA, ACHR009720-PA, ACHR003565-PA
Anopheles merus AMERU 4 AMEM017823-PA, AMEM001625-PA, AMEM008112-PA, AMEM012678-PA
Anopheles melas AMELA 4 AMEC006770-PA, AMEC014899-PA, AMEC006185-PA, AMEC002624-PA
Anopheles arabiensis AARAB 5 AARA000880-PA, AARA017164-PA, AARA016568-PA, AARA017163-PA, AARA003315-PA
Anopheles coluzzii ACOLU 5 ACOM026398-PA, ACOM039848-PA, ACOM037196-PA, ACOM026367-PA, ACOM037192-PA
Anopheles coluzzii ngousso ACOLUN 4 ACON006371-PA, ACON002317-PA, ACON012230-PA, ACON002318-PA
Anopheles gambiae AGAMB 4 AGAP012230-PA, AGAP002317-PA, AGAP006371-PA, AGAP002318-PA
Anopheles quadriannulatus AQUAD 3 AQUA000932-PA, AQUA002886-PA, AQUA010906-PA
Anopheles minimus AMINI 3 AMIN007997-PA, AMIN004599-PA, AMIN006938-PA
Anopheles culicifacies ACULI 4 ACUA004255-PA, ACUA020351-PA, ACUA007778-PA, ACUA009207-PA
Anopheles funestus AFUNE 6 AFUN016102-PA, AFUN016100-PA, AFUN019169-PA, AFUN005361-PA, AFUN016101-PA, AFUN005946-PA
Anopheles stephensi indian ASTEPI 5 ASTEI02447-PA, ASTEI02471-PA, ASTEI11557-PA, ASTEI00197-PA, ASTEI09424-PA
Anopheles stephensi ASTEP 4 ASTE003842-PA, ASTE011541-PA, ASTE003507-PA, ASTE000796-PA
Anopheles albimanus AALBI 4 AALB010179-PA, AALB009957-PA, AALB005920-PA, AALB002121-PA
Anopheles darlingi ADARL 4 ADAC003445-PA, ADAC003304-PA, ADAC003446-PA, ADAC004095-PA
Drosophila willistoni DWILL 3 FBpp0250687, FBpp0250906, FBpp0375743
Drosophila pseudoobscura DPSEU 3 FBpp0278221, FBpp0278794, FBpp0276268
Drosophila persimilis DPERS 4 FBpp0184163, FBpp0175931, FBpp0184157, FBpp0184165
Drosophila ananassae DANAN 5 FBpp0122035, FBpp0116650, FBpp0344793, FBpp0115773, FBpp0122036
Drosophila melanogaster DMELA 3 FBpp0086263, FBpp0086136, FBpp0086155
Drosophila sechellia DSECH 3 FBpp0204699, FBpp0201481, FBpp0201520
Drosophila simulans DSIMU 4 FBpp0317390, FBpp0223928, FBpp0223896, FBpp0328690
Drosophila erecta DEREC 3 FBpp0140801, FBpp0140762, FBpp0139209
Drosophila yakuba DYAKU 3 FBpp0357417, FBpp0256658, FBpp0259058
Drosophila virilis DVIRI 2 FBpp0232211, FBpp0235775
Drosophila mojavensis DMOJA 2 FBpp0167712, FBpp0169163
Drosophila grimshawi DGRIM 2 FBpp0407103, FBpp0156614
Lucilia cuprina LCUPR 4 KNC24214, KNC27493, KNC33450, KNC31016
Musca domestica MDOME 6 MDOA009434-PA, MDOA008297-PA, MDOA006202-PA, MDOA009746-PA, MDOA011970-PA, MDOA003190-PA
Stomoxys calcitrans SCALC 4 SCAU014413-PA, SCAU009279-PA, SCAU007995-PA, SCAU004452-PA
Glossina brevipalpis GBREV 1 GBRI035364-PA
Glossina palpalis GPALP 2 GPPI030252-PA, GPPI040786-PA
Glossina austeni GAUST 2 GAUT012815-PA, GAUT000658-PA
Glossina pallidipes GPALL 1 GPAI042637-PA
Glossina morsitans GMORS 2 GMOY010863-PA, GMOY004346-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g14591.t1) is OG0000167. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN29997_c0_g1_i17.p1, TRINITY_DN6632_c0_g4_i5.p1, TRINITY_DN1964_c0_g1_i6.p1
Parochlus steinenii PSTEI PSG00221, PSG00238, PSG05572, PSG09729, PSG05569, PSG00357, PSG09244
Trissopelopia nemorum TNEMO TRINITY_DN4221_c0_g1_i11.p1, TRINITY_DN1948_c0_g1_i5.p1, TRINITY_DN5993_c0_g1_i5.p1, TRINITY_DN1750_c0_g1_i4.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN6645_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN5652_c0_g3_i1.p1, TRINITY_DN5652_c0_g2_i2.p1, TRINITY_DN5652_c0_g1_i3.p1
Cricotopus draysoni CDRAY TRINITY_DN4963_c0_g1_i1.p1, TRINITY_DN1104_c0_g1_i1.p1, TRINITY_DN830_c1_g2_i1.p1, TRINITY_DN15886_c0_g1_i2.p1, TRINITY_DN4188_c0_g1_i1.p1, TRINITY_DN2526_c0_g1_i1.p1
Clunio marinus CMARI CRK95800.1, CRK90225.1, CRK89729.1, CRL04751.1, CRK93826.1, CRK89601.1
Cardiocladius sp CARDI TRINITY_DN18759_c0_g1_i2.p1, TRINITY_DN5943_c0_g1_i4.p1, TRINITY_DN2184_c0_g1_i10.p1, TRINITY_DN15298_c0_g2_i2.p1, TRINITY_DN3719_c0_g1_i4.p1, TRINITY_DN26791_c0_g1_i1.p1
Belgica antarctica BANTA IU25_04568-mRNA-1, IU25_05475-mRNA-1, IU25_00015-mRNA-1, IU25_08163-mRNA-1, IU25_06452-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN8516_c0_g1_i6.p1, TRINITY_DN5577_c0_g1_i2.p1, TRINITY_DN5644_c0_g1_i12.p1, TRINITY_DN779_c0_g1_i2.p1, TRINITY_DN26296_c0_g1_i2.p1, TRINITY_DN26296_c0_g2_i3.p1
Chironomus riparius CRIPA g3755.t1, g15785.t1, g14184.t1, g17143.t1, g868.t1, g4242.t1
Chironomus columbiensis CCOLU TRINITY_DN14961_c0_g1_i12.p1, TRINITY_DN5593_c0_g1_i1.p1, TRINITY_DN2519_c0_g1_i13.p1, TRINITY_DN2519_c0_g2_i1.p1, TRINITY_DN2690_c0_g1_i1.p1, TRINITY_DN6887_c0_g1_i1.p1, TRINITY_DN7465_c0_g1_i1.p1, TRINITY_DN2519_c1_g1_i1.p1
Chironomus tentans CTENT g14274.t1, g8638.t1, g149.t1, g8315.t1, g3641.t1, g144.t1, g14273.t1
Chironomus dilutus CDILU TRINITY_DN2751_c1_g1_i7.p1, TRINITY_DN1048_c1_g1_i1.p1, TRINITY_DN1048_c0_g1_i4.p1, TRINITY_DN1338_c0_g1_i3.p1, TRINITY_DN1636_c4_g1_i1.p1, TRINITY_DN13949_c0_g1_i1.p2, TRINITY_DN2249_c0_g1_i16.p1, TRINITY_DN2249_c0_g2_i1.p1
Polypedilum nubifer PNUBI Pn.00443, Pn.13009, Pn.03119, Pn.06196, Pn.09075, Pn.10627, Pn.13008, Pn.02336, Pn.06326, Pn.13007, Pn.03120
Polypedilum vanderplanki PVAND g597.t1, g4715.t1, g9055.t1, g17506.t1, g7793.t1, g598.t1, g6053.t1, g14591.t1
Polypedilum pembai PPEMB g13455.t1, g4662.t1, g8388.t1, g5602.t1, g227.t1, g11729.t1, g14922.t1
Culicoides sonorensis CSONO CSON013632-1, CSON011157-1, CSON008173-1, CSON014908-1, CSON013629-1, CSON014911-1, CSON012015-1, CSON011156-1
Aedes aegypti lvpagwg AAEGYL AAEL026011-PA, AAEL008452-PA, AAEL008451-PA, AAEL008456-PA, AAEL007673-PA, AAEL006719-PA, AAEL013421-PA
Anopheles gambiae AGAMB AGAP012230-PA, AGAP002317-PA, AGAP006371-PA, AGAP002318-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation