General information for g15826.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucose dehydrogenase.
Parent gene
- The parent gene g15826 is located on chr_4: 6918986..6920013 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15826 | g15826.t1 | isoform | g15826.t1 | 6918986 | 6920013 |
| chr_4 | g15826 | g15826.t1 | exon | g15826.t1.exon1 | 6918986 | 6919109 |
| chr_4 | g15826 | g15826.t1 | cds | g15826.t1.CDS1 | 6918986 | 6919109 |
| chr_4 | g15826 | g15826.t1 | exon | g15826.t1.exon2 | 6919167 | 6919484 |
| chr_4 | g15826 | g15826.t1 | cds | g15826.t1.CDS2 | 6919167 | 6919484 |
| chr_4 | g15826 | g15826.t1 | exon | g15826.t1.exon3 | 6919634 | 6920013 |
| chr_4 | g15826 | g15826.t1 | cds | g15826.t1.CDS3 | 6919634 | 6920013 |
| chr_4 | g15826 | g15826.t1 | TSS | g15826.t1 | NA | NA |
| chr_4 | g15826 | g15826.t1 | TTS | g15826.t1 | NA | NA |
Sequences
>g15826.t1 Gene=g15826 Length=822
ATGTTGATAAAAATCTTTATAACAATTTTGTTTGCCAAAATAATTCAATGTCAAATAAAT
TTATCAAGATTTTCTCCACTTGTTGAAAATCTGGTTAAAAATTATGGAAAACAAACTGTT
GAACAATCAAAGTACCATCAAATTTACGACTTTGTAATCGTTGGAAGTGGACCAGGGGGT
TGTGTTTTAGCAAATCGACTAACAGAAAATCCAAAAATTAAAGTTCTTATGATCGAAGCC
GGCACAGTTGAAACAATTGCTCAAGGTGTTCCATTGATTGCACCTTTAAGTGTTGAAAGT
CGTTACAATTGGGGATATTTAGCTGAAAAACAAGAATATTCATGTAGAGGCTTAAGAGAT
GGACAATGTGCTTATCCTAGAGGAAAAGCATTAGGTGGAAGCTCTGTTATAAATGGAATG
GTTTATACTAGGGGAAGTAAAGGTGACTTTGACCATTGGAAGCAACTCGGTATAGAAAAT
TGGGATTATGAAACTCAAGTTCTTCCAGCATTTAAAAGATCAGAACGTGCAAATCTCAAA
TATTTTCATAAGCCAGAATTTCACAACATTTCAGGCTCACTTTCAGTCACAAATAGTCCA
TACGAGACTCCATTCGCTAAAATCTTCATAAATGCAATGAAATCATTAAATTACTCAGAA
ATTGACTTAAATTCCGATGACTCAATTGGTGTTGGTCGTTTACAATCAAATACACTCAGA
GGAGTTCGACATTCAGCTTTTGAAGCCTTCATTCGACCTGTTTTGAAAAGAAAAAAATTT
ACACATCATGATCAACACACGTGTGACAAAAATTCTCATTGA
>g15826.t1 Gene=g15826 Length=273
MLIKIFITILFAKIIQCQINLSRFSPLVENLVKNYGKQTVEQSKYHQIYDFVIVGSGPGG
CVLANRLTENPKIKVLMIEAGTVETIAQGVPLIAPLSVESRYNWGYLAEKQEYSCRGLRD
GQCAYPRGKALGGSSVINGMVYTRGSKGDFDHWKQLGIENWDYETQVLPAFKRSERANLK
YFHKPEFHNISGSLSVTNSPYETPFAKIFINAMKSLNYSEIDLNSDDSIGVGRLQSNTLR
GVRHSAFEAFIRPVLKRKKFTHHDQHTCDKNSH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15826.t1 | Gene3D | G3DSA:3.50.50.60 | - | 49 | 266 | 4.5E-62 |
| 8 | g15826.t1 | Gene3D | G3DSA:3.30.560.10 | Glucose Oxidase | 86 | 245 | 4.5E-62 |
| 2 | g15826.t1 | PANTHER | PTHR11552:SF220 | RE36204P-RELATED | 5 | 259 | 8.5E-75 |
| 3 | g15826.t1 | PANTHER | PTHR11552 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE | 5 | 259 | 8.5E-75 |
| 1 | g15826.t1 | Pfam | PF00732 | GMC oxidoreductase | 49 | 259 | 3.4E-40 |
| 10 | g15826.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 11 | g15826.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 12 | g15826.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 12 | - |
| 13 | g15826.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 9 | g15826.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 273 | - |
| 5 | g15826.t1 | ProSitePatterns | PS00623 | GMC oxidoreductases signature 1. | 128 | 151 | - |
| 4 | g15826.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 47 | 267 | 7.77E-32 |
| 6 | g15826.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed